Gene : Eucgr.A02546 E. grandis v2.0
Defline:  (1 of 2) 5.2.1.13 - Prolycopene isomerase / CRTISO Genomic Order:  2281
Name:  ? Eucgr.A02546 Secondary Identifier:  ? PAC:32048627
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis CAROTENOID-PWY Eucalyptus grandis pathologic  
Egrandis PWY-6475 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A02546 0.5kb upstream 0.5kb upstream 5777 true Chr01: 40687008-40692784 Eucalyptus grandis
Eucgr.A02546 0.5kb upstream 0.5kb upstream 500 false Chr01: 40692285-40692784 Eucalyptus grandis
Eucgr.A02546 0.5kb downstream 0.5kb downstream 5777 true Chr01: 40686508-40692284 Eucalyptus grandis
Eucgr.A02546 0.5kb downstream 0.5kb downstream 500 false Chr01: 40686508-40687007 Eucalyptus grandis
Eucgr.A02546 1.0kb upstream 1.0kb upstream 6277 true Chr01: 40687008-40693284 Eucalyptus grandis
Eucgr.A02546 1.0kb upstream 1.0kb upstream 1000 false Chr01: 40692285-40693284 Eucalyptus grandis
Eucgr.A02546 1.0kb downstream 1.0kb downstream 6277 true Chr01: 40686008-40692284 Eucalyptus grandis
Eucgr.A02546 1.0kb downstream 1.0kb downstream 1000 false Chr01: 40686008-40687007 Eucalyptus grandis
Eucgr.A02546 2.0kb upstream 2.0kb upstream 7277 true Chr01: 40687008-40694284 Eucalyptus grandis
Eucgr.A02546 2.0kb upstream 2.0kb upstream 2000 false Chr01: 40692285-40694284 Eucalyptus grandis
Eucgr.A02546 2.0kb downstream 2.0kb downstream 7277 true Chr01: 40685008-40692284 Eucalyptus grandis
Eucgr.A02546 2.0kb downstream 2.0kb downstream 2000 false Chr01: 40685008-40687007 Eucalyptus grandis
Eucgr.A02546 5.0kb upstream 5.0kb upstream 10277 true Chr01: 40687008-40697284 Eucalyptus grandis
Eucgr.A02546 5.0kb upstream 5.0kb upstream 5000 false Chr01: 40692285-40697284 Eucalyptus grandis
Eucgr.A02546 5.0kb downstream 5.0kb downstream 10277 true Chr01: 40682008-40692284 Eucalyptus grandis
Eucgr.A02546 5.0kb downstream 5.0kb downstream 5000 false Chr01: 40682008-40687007 Eucalyptus grandis
Eucgr.A02546 10.0kb upstream 10.0kb upstream 15277 true Chr01: 40687008-40702284 Eucalyptus grandis
Eucgr.A02546 10.0kb upstream 10.0kb upstream 10000 false Chr01: 40692285-40702284 Eucalyptus grandis
Eucgr.A02546 10.0kb downstream 10.0kb downstream 15277 true Chr01: 40677008-40692284 Eucalyptus grandis
Eucgr.A02546 10.0kb downstream 10.0kb downstream 10000 false Chr01: 40677008-40687007 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026345 5273 Angiosperm View MSA
124064637 5270 Rosid View MSA
123738016 5271 Pentapetalae View MSA
122791420 5272 Eudicot View MSA
121345795 5274 Embryophyte View MSA
123425130 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.43963 0.0 8.42861    
cufflinks 2.57296 0.0 6.46278    
cufflinks 2.52315 0.0 6.36252    
cufflinks 0.843835 0.0 2.35952   Low
cufflinks 2.52115 0.0 6.35937    
cufflinks 4.936 0.0 11.6908   High

0 Strain