Gene : Eucgr.B00079 E. grandis v2.0
Defline:  (1 of 7) 5.4.99.28 - tRNA pseudouridine(32) synthase / Pseudouridine synthase RluA Genomic Order:  10
Name:  ? Eucgr.B00079 Secondary Identifier:  ? PAC:32062042
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.B00079 0.5kb upstream 0.5kb upstream 5597 true Chr02: 213435-219031 Eucalyptus grandis
Eucgr.B00079 0.5kb upstream 0.5kb upstream 500 false Chr02: 218532-219031 Eucalyptus grandis
Eucgr.B00079 0.5kb downstream 0.5kb downstream 5597 true Chr02: 212935-218531 Eucalyptus grandis
Eucgr.B00079 0.5kb downstream 0.5kb downstream 500 false Chr02: 212935-213434 Eucalyptus grandis
Eucgr.B00079 1.0kb upstream 1.0kb upstream 6097 true Chr02: 213435-219531 Eucalyptus grandis
Eucgr.B00079 1.0kb upstream 1.0kb upstream 1000 false Chr02: 218532-219531 Eucalyptus grandis
Eucgr.B00079 1.0kb downstream 1.0kb downstream 6097 true Chr02: 212435-218531 Eucalyptus grandis
Eucgr.B00079 1.0kb downstream 1.0kb downstream 1000 false Chr02: 212435-213434 Eucalyptus grandis
Eucgr.B00079 2.0kb upstream 2.0kb upstream 7097 true Chr02: 213435-220531 Eucalyptus grandis
Eucgr.B00079 2.0kb upstream 2.0kb upstream 2000 false Chr02: 218532-220531 Eucalyptus grandis
Eucgr.B00079 2.0kb downstream 2.0kb downstream 7097 true Chr02: 211435-218531 Eucalyptus grandis
Eucgr.B00079 2.0kb downstream 2.0kb downstream 2000 false Chr02: 211435-213434 Eucalyptus grandis
Eucgr.B00079 5.0kb upstream 5.0kb upstream 10097 true Chr02: 213435-223531 Eucalyptus grandis
Eucgr.B00079 5.0kb upstream 5.0kb upstream 5000 false Chr02: 218532-223531 Eucalyptus grandis
Eucgr.B00079 5.0kb downstream 5.0kb downstream 10097 true Chr02: 208435-218531 Eucalyptus grandis
Eucgr.B00079 5.0kb downstream 5.0kb downstream 5000 false Chr02: 208435-213434 Eucalyptus grandis
Eucgr.B00079 10.0kb upstream 10.0kb upstream 15097 true Chr02: 213435-228531 Eucalyptus grandis
Eucgr.B00079 10.0kb upstream 10.0kb upstream 10000 false Chr02: 218532-228531 Eucalyptus grandis
Eucgr.B00079 10.0kb downstream 10.0kb downstream 15097 true Chr02: 203435-218531 Eucalyptus grandis
Eucgr.B00079 10.0kb downstream 10.0kb downstream 10000 false Chr02: 203435-213434 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124064384 5270 Rosid View MSA
123747081 5271 Pentapetalae View MSA
122790288 5272 Eudicot View MSA
122047695 5273 Angiosperm View MSA
121349064 5274 Embryophyte View MSA
123426945 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.85042 0.0 5.53499    
cufflinks 6.04191 0.0 17.0194   High
cufflinks 2.24365 0.0 6.35115    
cufflinks 6.23033 0.0 15.3209   High
cufflinks 1.46812 0.0 4.56732    
cufflinks 1.75996 0.0 5.27417    

0 Strain