Gene : Eucgr.L00009 E. grandis v2.0
Defline:  (1 of 1) PTHR10314:SF110 - CYSTEINE SYNTHASE Genomic Order:  171
Name:  ? Eucgr.L00009 Secondary Identifier:  ? PAC:32047665
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis CYSTSYN-PWY Eucalyptus grandis pathologic  
Egrandis PWY-6936 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.L00009 0.5kb upstream 0.5kb upstream 6645 true Chr01: 2968286-2974930 Eucalyptus grandis
Eucgr.L00009 0.5kb upstream 0.5kb upstream 500 false Chr01: 2974431-2974930 Eucalyptus grandis
Eucgr.L00009 0.5kb downstream 0.5kb downstream 6645 true Chr01: 2967786-2974430 Eucalyptus grandis
Eucgr.L00009 0.5kb downstream 0.5kb downstream 500 false Chr01: 2967786-2968285 Eucalyptus grandis
Eucgr.L00009 1.0kb upstream 1.0kb upstream 7145 true Chr01: 2968286-2975430 Eucalyptus grandis
Eucgr.L00009 1.0kb upstream 1.0kb upstream 1000 false Chr01: 2974431-2975430 Eucalyptus grandis
Eucgr.L00009 1.0kb downstream 1.0kb downstream 7145 true Chr01: 2967286-2974430 Eucalyptus grandis
Eucgr.L00009 1.0kb downstream 1.0kb downstream 1000 false Chr01: 2967286-2968285 Eucalyptus grandis
Eucgr.L00009 2.0kb upstream 2.0kb upstream 8145 true Chr01: 2968286-2976430 Eucalyptus grandis
Eucgr.L00009 2.0kb upstream 2.0kb upstream 2000 false Chr01: 2974431-2976430 Eucalyptus grandis
Eucgr.L00009 2.0kb downstream 2.0kb downstream 8145 true Chr01: 2966286-2974430 Eucalyptus grandis
Eucgr.L00009 2.0kb downstream 2.0kb downstream 2000 false Chr01: 2966286-2968285 Eucalyptus grandis
Eucgr.L00009 5.0kb upstream 5.0kb upstream 11145 true Chr01: 2968286-2979430 Eucalyptus grandis
Eucgr.L00009 5.0kb upstream 5.0kb upstream 5000 false Chr01: 2974431-2979430 Eucalyptus grandis
Eucgr.L00009 5.0kb downstream 5.0kb downstream 11145 true Chr01: 2963286-2974430 Eucalyptus grandis
Eucgr.L00009 5.0kb downstream 5.0kb downstream 5000 false Chr01: 2963286-2968285 Eucalyptus grandis
Eucgr.L00009 10.0kb upstream 10.0kb upstream 16145 true Chr01: 2968286-2984430 Eucalyptus grandis
Eucgr.L00009 10.0kb upstream 10.0kb upstream 10000 false Chr01: 2974431-2984430 Eucalyptus grandis
Eucgr.L00009 10.0kb downstream 10.0kb downstream 16145 true Chr01: 2958286-2974430 Eucalyptus grandis
Eucgr.L00009 10.0kb downstream 10.0kb downstream 10000 false Chr01: 2958286-2968285 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068226 5270 Rosid View MSA
123737517 5271 Pentapetalae View MSA
122787269 5272 Eudicot View MSA
122042312 5273 Angiosperm View MSA
121350970 5274 Embryophyte View MSA
123424805 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.2043 0.0 73.9515 High  
cufflinks 17.5328 0.0 39.5967    
cufflinks 22.5447 0.0 64.7013    
cufflinks 16.1998 0.0 41.3993    
cufflinks 14.5848 0.0 33.6765   Low
cufflinks 44.3891 0.0 102.162 High High

0 Strain