Gene : Eucgr.B00825 E. grandis v2.0
Defline:  (1 of 4) 4.2.1.113 - o-succinylbenzoate synthase / OSBS Genomic Order:  636
Name:  ? Eucgr.B00825 Secondary Identifier:  ? PAC:32059903
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-5837 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.B00825 0.5kb upstream 0.5kb upstream 3497 true Chr02: 8535783-8539279 Eucalyptus grandis
Eucgr.B00825 0.5kb upstream 0.5kb upstream 500 false Chr02: 8538780-8539279 Eucalyptus grandis
Eucgr.B00825 0.5kb downstream 0.5kb downstream 3497 true Chr02: 8535283-8538779 Eucalyptus grandis
Eucgr.B00825 0.5kb downstream 0.5kb downstream 500 false Chr02: 8535283-8535782 Eucalyptus grandis
Eucgr.B00825 1.0kb upstream 1.0kb upstream 3997 true Chr02: 8535783-8539779 Eucalyptus grandis
Eucgr.B00825 1.0kb upstream 1.0kb upstream 1000 false Chr02: 8538780-8539779 Eucalyptus grandis
Eucgr.B00825 1.0kb downstream 1.0kb downstream 3997 true Chr02: 8534783-8538779 Eucalyptus grandis
Eucgr.B00825 1.0kb downstream 1.0kb downstream 1000 false Chr02: 8534783-8535782 Eucalyptus grandis
Eucgr.B00825 2.0kb upstream 2.0kb upstream 4997 true Chr02: 8535783-8540779 Eucalyptus grandis
Eucgr.B00825 2.0kb upstream 2.0kb upstream 2000 false Chr02: 8538780-8540779 Eucalyptus grandis
Eucgr.B00825 2.0kb downstream 2.0kb downstream 4997 true Chr02: 8533783-8538779 Eucalyptus grandis
Eucgr.B00825 2.0kb downstream 2.0kb downstream 2000 false Chr02: 8533783-8535782 Eucalyptus grandis
Eucgr.B00825 5.0kb upstream 5.0kb upstream 7997 true Chr02: 8535783-8543779 Eucalyptus grandis
Eucgr.B00825 5.0kb upstream 5.0kb upstream 5000 false Chr02: 8538780-8543779 Eucalyptus grandis
Eucgr.B00825 5.0kb downstream 5.0kb downstream 7997 true Chr02: 8530783-8538779 Eucalyptus grandis
Eucgr.B00825 5.0kb downstream 5.0kb downstream 5000 false Chr02: 8530783-8535782 Eucalyptus grandis
Eucgr.B00825 10.0kb upstream 10.0kb upstream 12997 true Chr02: 8535783-8548779 Eucalyptus grandis
Eucgr.B00825 10.0kb upstream 10.0kb upstream 10000 false Chr02: 8538780-8548779 Eucalyptus grandis
Eucgr.B00825 10.0kb downstream 10.0kb downstream 12997 true Chr02: 8525783-8538779 Eucalyptus grandis
Eucgr.B00825 10.0kb downstream 10.0kb downstream 10000 false Chr02: 8525783-8535782 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068265 5270 Rosid View MSA
123736844 5271 Pentapetalae View MSA
122793811 5272 Eudicot View MSA
122046477 5273 Angiosperm View MSA
121344222 5274 Embryophyte View MSA
123380007 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.2608 0.0 10.7645    
cufflinks 1.39072 0.0 3.93871   Low
cufflinks 4.28801 0.0 10.8504    
cufflinks 1.37589 0.0 3.88536   Low
cufflinks 6.7126 0.0 16.2516   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain