Gene : Eucgr.B01770 E. grandis v2.0
Defline:  (1 of 1) PTHR21089//PTHR21089:SF10 - SHIKIMATE DEHYDROGENASE Genomic Order:  1578
Name:  ? Eucgr.B01770 Secondary Identifier:  ? PAC:32058572
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis ARO-PWY Eucalyptus grandis pathologic  
Egrandis PWY-6163 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.B01770 0.5kb upstream 0.5kb upstream 5633 true Chr02: 38430808-38436440 Eucalyptus grandis
Eucgr.B01770 0.5kb upstream 0.5kb upstream 500 false Chr02: 38435941-38436440 Eucalyptus grandis
Eucgr.B01770 0.5kb downstream 0.5kb downstream 5633 true Chr02: 38430308-38435940 Eucalyptus grandis
Eucgr.B01770 0.5kb downstream 0.5kb downstream 500 false Chr02: 38430308-38430807 Eucalyptus grandis
Eucgr.B01770 1.0kb upstream 1.0kb upstream 6133 true Chr02: 38430808-38436940 Eucalyptus grandis
Eucgr.B01770 1.0kb upstream 1.0kb upstream 1000 false Chr02: 38435941-38436940 Eucalyptus grandis
Eucgr.B01770 1.0kb downstream 1.0kb downstream 6133 true Chr02: 38429808-38435940 Eucalyptus grandis
Eucgr.B01770 1.0kb downstream 1.0kb downstream 1000 false Chr02: 38429808-38430807 Eucalyptus grandis
Eucgr.B01770 2.0kb upstream 2.0kb upstream 7133 true Chr02: 38430808-38437940 Eucalyptus grandis
Eucgr.B01770 2.0kb upstream 2.0kb upstream 2000 false Chr02: 38435941-38437940 Eucalyptus grandis
Eucgr.B01770 2.0kb downstream 2.0kb downstream 7133 true Chr02: 38428808-38435940 Eucalyptus grandis
Eucgr.B01770 2.0kb downstream 2.0kb downstream 2000 false Chr02: 38428808-38430807 Eucalyptus grandis
Eucgr.B01770 5.0kb upstream 5.0kb upstream 10133 true Chr02: 38430808-38440940 Eucalyptus grandis
Eucgr.B01770 5.0kb upstream 5.0kb upstream 5000 false Chr02: 38435941-38440940 Eucalyptus grandis
Eucgr.B01770 5.0kb downstream 5.0kb downstream 10133 true Chr02: 38425808-38435940 Eucalyptus grandis
Eucgr.B01770 5.0kb downstream 5.0kb downstream 5000 false Chr02: 38425808-38430807 Eucalyptus grandis
Eucgr.B01770 10.0kb upstream 10.0kb upstream 15133 true Chr02: 38430808-38445940 Eucalyptus grandis
Eucgr.B01770 10.0kb upstream 10.0kb upstream 10000 false Chr02: 38435941-38445940 Eucalyptus grandis
Eucgr.B01770 10.0kb downstream 10.0kb downstream 15133 true Chr02: 38420808-38435940 Eucalyptus grandis
Eucgr.B01770 10.0kb downstream 10.0kb downstream 10000 false Chr02: 38420808-38430807 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791917 5273 Angiosperm View MSA
124070168 5270 Rosid View MSA
123749206 5271 Pentapetalae View MSA
122795293 5272 Eudicot View MSA
121063186 5274 Embryophyte View MSA
123102956 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.6732 0.0 29.3839    
cufflinks 15.5215 0.0 38.8162    
cufflinks 4.94085 0.0 11.8664    
cufflinks 6.93249 0.0 18.2758    
cufflinks 0.211899 0.0 0.874591 Low Low
cufflinks 34.6314 0.0 93.1462 High  

0 Strain