Gene : Eucgr.B01574 E. grandis v2.0
Defline:  (1 of 1) PTHR22904:SF169 - RNA POLYMERASE II-ASSOCIATED PROTEIN 3 Genomic Order:  1098
Name:  ? Eucgr.B01574 Secondary Identifier:  ? PAC:32062287
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.B01574 0.5kb upstream 0.5kb upstream 3351 true Chr02: 22643874-22647224 Eucalyptus grandis
Eucgr.B01574 0.5kb upstream 0.5kb upstream 500 false Chr02: 22643874-22644373 Eucalyptus grandis
Eucgr.B01574 0.5kb downstream 0.5kb downstream 3351 true Chr02: 22644374-22647724 Eucalyptus grandis
Eucgr.B01574 0.5kb downstream 0.5kb downstream 500 false Chr02: 22647225-22647724 Eucalyptus grandis
Eucgr.B01574 1.0kb upstream 1.0kb upstream 3851 true Chr02: 22643374-22647224 Eucalyptus grandis
Eucgr.B01574 1.0kb upstream 1.0kb upstream 1000 false Chr02: 22643374-22644373 Eucalyptus grandis
Eucgr.B01574 1.0kb downstream 1.0kb downstream 3851 true Chr02: 22644374-22648224 Eucalyptus grandis
Eucgr.B01574 1.0kb downstream 1.0kb downstream 1000 false Chr02: 22647225-22648224 Eucalyptus grandis
Eucgr.B01574 2.0kb upstream 2.0kb upstream 4851 true Chr02: 22642374-22647224 Eucalyptus grandis
Eucgr.B01574 2.0kb upstream 2.0kb upstream 2000 false Chr02: 22642374-22644373 Eucalyptus grandis
Eucgr.B01574 2.0kb downstream 2.0kb downstream 4851 true Chr02: 22644374-22649224 Eucalyptus grandis
Eucgr.B01574 2.0kb downstream 2.0kb downstream 2000 false Chr02: 22647225-22649224 Eucalyptus grandis
Eucgr.B01574 5.0kb upstream 5.0kb upstream 7851 true Chr02: 22639374-22647224 Eucalyptus grandis
Eucgr.B01574 5.0kb upstream 5.0kb upstream 5000 false Chr02: 22639374-22644373 Eucalyptus grandis
Eucgr.B01574 5.0kb downstream 5.0kb downstream 7851 true Chr02: 22644374-22652224 Eucalyptus grandis
Eucgr.B01574 5.0kb downstream 5.0kb downstream 5000 false Chr02: 22647225-22652224 Eucalyptus grandis
Eucgr.B01574 10.0kb upstream 10.0kb upstream 12851 true Chr02: 22634374-22647224 Eucalyptus grandis
Eucgr.B01574 10.0kb upstream 10.0kb upstream 10000 false Chr02: 22634374-22644373 Eucalyptus grandis
Eucgr.B01574 10.0kb downstream 10.0kb downstream 12851 true Chr02: 22644374-22657224 Eucalyptus grandis
Eucgr.B01574 10.0kb downstream 10.0kb downstream 10000 false Chr02: 22647225-22657224 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026696 5273 Angiosperm View MSA
124069433 5270 Rosid View MSA
123746924 5271 Pentapetalae View MSA
122794448 5272 Eudicot View MSA
123429169 5275 Viridiplantae View MSA
121348213 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.461 0.0 39.4481   Low
cufflinks 38.6999 0.0 90.016    
cufflinks 20.3163 0.0 45.6861    
cufflinks 56.4995 0.0 128.399 High High
cufflinks 28.5516 0.0 64.8481    
cufflinks 20.5874 0.0 46.1463    

0 Strain