Gene : Eucgr.B02145 E. grandis v2.0
Defline:  (1 of 2) PTHR33372:SF1 - CHLOROPLAST J-LIKE DOMAIN 1-CONTAINING PROTEIN Genomic Order:  1674
Name:  ? Eucgr.B02145 Secondary Identifier:  ? PAC:32061261
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.B02145 0.5kb upstream 0.5kb upstream 5812 true Chr02: 40450020-40455831 Eucalyptus grandis
Eucgr.B02145 0.5kb upstream 0.5kb upstream 500 false Chr02: 40450020-40450519 Eucalyptus grandis
Eucgr.B02145 0.5kb downstream 0.5kb downstream 5812 true Chr02: 40450520-40456331 Eucalyptus grandis
Eucgr.B02145 0.5kb downstream 0.5kb downstream 500 false Chr02: 40455832-40456331 Eucalyptus grandis
Eucgr.B02145 1.0kb upstream 1.0kb upstream 6312 true Chr02: 40449520-40455831 Eucalyptus grandis
Eucgr.B02145 1.0kb upstream 1.0kb upstream 1000 false Chr02: 40449520-40450519 Eucalyptus grandis
Eucgr.B02145 1.0kb downstream 1.0kb downstream 6312 true Chr02: 40450520-40456831 Eucalyptus grandis
Eucgr.B02145 1.0kb downstream 1.0kb downstream 1000 false Chr02: 40455832-40456831 Eucalyptus grandis
Eucgr.B02145 2.0kb upstream 2.0kb upstream 7312 true Chr02: 40448520-40455831 Eucalyptus grandis
Eucgr.B02145 2.0kb upstream 2.0kb upstream 2000 false Chr02: 40448520-40450519 Eucalyptus grandis
Eucgr.B02145 2.0kb downstream 2.0kb downstream 7312 true Chr02: 40450520-40457831 Eucalyptus grandis
Eucgr.B02145 2.0kb downstream 2.0kb downstream 2000 false Chr02: 40455832-40457831 Eucalyptus grandis
Eucgr.B02145 5.0kb upstream 5.0kb upstream 10312 true Chr02: 40445520-40455831 Eucalyptus grandis
Eucgr.B02145 5.0kb upstream 5.0kb upstream 5000 false Chr02: 40445520-40450519 Eucalyptus grandis
Eucgr.B02145 5.0kb downstream 5.0kb downstream 10312 true Chr02: 40450520-40460831 Eucalyptus grandis
Eucgr.B02145 5.0kb downstream 5.0kb downstream 5000 false Chr02: 40455832-40460831 Eucalyptus grandis
Eucgr.B02145 10.0kb upstream 10.0kb upstream 15312 true Chr02: 40440520-40455831 Eucalyptus grandis
Eucgr.B02145 10.0kb upstream 10.0kb upstream 10000 false Chr02: 40440520-40450519 Eucalyptus grandis
Eucgr.B02145 10.0kb downstream 10.0kb downstream 15312 true Chr02: 40450520-40465831 Eucalyptus grandis
Eucgr.B02145 10.0kb downstream 10.0kb downstream 10000 false Chr02: 40455832-40465831 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124063539 5270 Rosid View MSA
123738014 5271 Pentapetalae View MSA
122791822 5272 Eudicot View MSA
122045556 5273 Angiosperm View MSA
121344488 5274 Embryophyte View MSA
123428806 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.95881 0.0 9.99166    
cufflinks 3.74058 0.0 9.42127    
cufflinks 3.26731 0.0 8.37884    
cufflinks 1.97328 0.0 5.28782   Low
cufflinks 3.82858 0.0 9.64605    
cufflinks 5.3987 0.0 13.2621   High

0 Strain