Gene : Eucgr.B03399 E. grandis v2.0
Defline:  (1 of 1) PTHR16263:SF4 - TETRATRICOPEPTIDE REPEAT PROTEIN 38 Genomic Order:  2578
Name:  ? Eucgr.B03399 Secondary Identifier:  ? PAC:32060750
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.B03399 0.5kb upstream 0.5kb upstream 6100 true Chr02: 52928992-52935091 Eucalyptus grandis
Eucgr.B03399 0.5kb upstream 0.5kb upstream 500 false Chr02: 52934592-52935091 Eucalyptus grandis
Eucgr.B03399 0.5kb downstream 0.5kb downstream 6100 true Chr02: 52928492-52934591 Eucalyptus grandis
Eucgr.B03399 0.5kb downstream 0.5kb downstream 500 false Chr02: 52928492-52928991 Eucalyptus grandis
Eucgr.B03399 1.0kb upstream 1.0kb upstream 6600 true Chr02: 52928992-52935591 Eucalyptus grandis
Eucgr.B03399 1.0kb upstream 1.0kb upstream 1000 false Chr02: 52934592-52935591 Eucalyptus grandis
Eucgr.B03399 1.0kb downstream 1.0kb downstream 6600 true Chr02: 52927992-52934591 Eucalyptus grandis
Eucgr.B03399 1.0kb downstream 1.0kb downstream 1000 false Chr02: 52927992-52928991 Eucalyptus grandis
Eucgr.B03399 2.0kb upstream 2.0kb upstream 7600 true Chr02: 52928992-52936591 Eucalyptus grandis
Eucgr.B03399 2.0kb upstream 2.0kb upstream 2000 false Chr02: 52934592-52936591 Eucalyptus grandis
Eucgr.B03399 2.0kb downstream 2.0kb downstream 7600 true Chr02: 52926992-52934591 Eucalyptus grandis
Eucgr.B03399 2.0kb downstream 2.0kb downstream 2000 false Chr02: 52926992-52928991 Eucalyptus grandis
Eucgr.B03399 5.0kb upstream 5.0kb upstream 10600 true Chr02: 52928992-52939591 Eucalyptus grandis
Eucgr.B03399 5.0kb upstream 5.0kb upstream 5000 false Chr02: 52934592-52939591 Eucalyptus grandis
Eucgr.B03399 5.0kb downstream 5.0kb downstream 10600 true Chr02: 52923992-52934591 Eucalyptus grandis
Eucgr.B03399 5.0kb downstream 5.0kb downstream 5000 false Chr02: 52923992-52928991 Eucalyptus grandis
Eucgr.B03399 10.0kb upstream 10.0kb upstream 15600 true Chr02: 52928992-52944591 Eucalyptus grandis
Eucgr.B03399 10.0kb upstream 10.0kb upstream 10000 false Chr02: 52934592-52944591 Eucalyptus grandis
Eucgr.B03399 10.0kb downstream 10.0kb downstream 15600 true Chr02: 52918992-52934591 Eucalyptus grandis
Eucgr.B03399 10.0kb downstream 10.0kb downstream 10000 false Chr02: 52918992-52928991 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066695 5270 Rosid View MSA
123740616 5271 Pentapetalae View MSA
122790919 5272 Eudicot View MSA
122043704 5273 Angiosperm View MSA
121346225 5274 Embryophyte View MSA
123380350 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.431 0.0 41.2691    
cufflinks 22.0997 0.0 49.7569    
cufflinks 20.8787 0.0 52.0533    
cufflinks 14.2005 0.0 32.486    
cufflinks 14.0904 0.0 32.3192   Low
cufflinks 28.3537 0.0 63.9529   High

0 Strain