Gene : Eucgr.B03312 E. grandis v2.0
Defline:  (1 of 1) PTHR31375:SF46 - PECTIN LYASE-LIKE PROTEIN Genomic Order:  2654
Name:  ? Eucgr.B03312 Secondary Identifier:  ? PAC:32059403
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-1081 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.B03312 0.5kb upstream 0.5kb upstream 5821 true Chr02: 53709888-53715708 Eucalyptus grandis
Eucgr.B03312 0.5kb upstream 0.5kb upstream 500 false Chr02: 53715209-53715708 Eucalyptus grandis
Eucgr.B03312 0.5kb downstream 0.5kb downstream 5821 true Chr02: 53709388-53715208 Eucalyptus grandis
Eucgr.B03312 0.5kb downstream 0.5kb downstream 500 false Chr02: 53709388-53709887 Eucalyptus grandis
Eucgr.B03312 1.0kb upstream 1.0kb upstream 6321 true Chr02: 53709888-53716208 Eucalyptus grandis
Eucgr.B03312 1.0kb upstream 1.0kb upstream 1000 false Chr02: 53715209-53716208 Eucalyptus grandis
Eucgr.B03312 1.0kb downstream 1.0kb downstream 6321 true Chr02: 53708888-53715208 Eucalyptus grandis
Eucgr.B03312 1.0kb downstream 1.0kb downstream 1000 false Chr02: 53708888-53709887 Eucalyptus grandis
Eucgr.B03312 2.0kb upstream 2.0kb upstream 7321 true Chr02: 53709888-53717208 Eucalyptus grandis
Eucgr.B03312 2.0kb upstream 2.0kb upstream 2000 false Chr02: 53715209-53717208 Eucalyptus grandis
Eucgr.B03312 2.0kb downstream 2.0kb downstream 7321 true Chr02: 53707888-53715208 Eucalyptus grandis
Eucgr.B03312 2.0kb downstream 2.0kb downstream 2000 false Chr02: 53707888-53709887 Eucalyptus grandis
Eucgr.B03312 5.0kb upstream 5.0kb upstream 10321 true Chr02: 53709888-53720208 Eucalyptus grandis
Eucgr.B03312 5.0kb upstream 5.0kb upstream 5000 false Chr02: 53715209-53720208 Eucalyptus grandis
Eucgr.B03312 5.0kb downstream 5.0kb downstream 10321 true Chr02: 53704888-53715208 Eucalyptus grandis
Eucgr.B03312 5.0kb downstream 5.0kb downstream 5000 false Chr02: 53704888-53709887 Eucalyptus grandis
Eucgr.B03312 10.0kb upstream 10.0kb upstream 15321 true Chr02: 53709888-53725208 Eucalyptus grandis
Eucgr.B03312 10.0kb upstream 10.0kb upstream 10000 false Chr02: 53715209-53725208 Eucalyptus grandis
Eucgr.B03312 10.0kb downstream 10.0kb downstream 15321 true Chr02: 53699888-53715208 Eucalyptus grandis
Eucgr.B03312 10.0kb downstream 10.0kb downstream 10000 false Chr02: 53699888-53709887 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124069047 5270 Rosid View MSA
123746876 5271 Pentapetalae View MSA
122793930 5272 Eudicot View MSA
122049793 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.93615 0.0 9.54968    
cufflinks 0.912181 0.0 2.8187   Low
cufflinks 2.82307 0.0 7.10392    
cufflinks 1.13221 0.0 3.73437    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 5.37634 0.0 14.7054   High

0 Strain