Gene : Eucgr.B03236 E. grandis v2.0
Defline:  (1 of 1) PTHR34790:SF1 - PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC Genomic Order:  2724
Name:  ? Eucgr.B03236 Secondary Identifier:  ? PAC:32059754
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.B03236 0.5kb upstream 0.5kb upstream 1569 true Chr02: 54441794-54443362 Eucalyptus grandis
Eucgr.B03236 0.5kb upstream 0.5kb upstream 500 false Chr02: 54441794-54442293 Eucalyptus grandis
Eucgr.B03236 0.5kb downstream 0.5kb downstream 1569 true Chr02: 54442294-54443862 Eucalyptus grandis
Eucgr.B03236 0.5kb downstream 0.5kb downstream 500 false Chr02: 54443363-54443862 Eucalyptus grandis
Eucgr.B03236 1.0kb upstream 1.0kb upstream 2069 true Chr02: 54441294-54443362 Eucalyptus grandis
Eucgr.B03236 1.0kb upstream 1.0kb upstream 1000 false Chr02: 54441294-54442293 Eucalyptus grandis
Eucgr.B03236 1.0kb downstream 1.0kb downstream 2069 true Chr02: 54442294-54444362 Eucalyptus grandis
Eucgr.B03236 1.0kb downstream 1.0kb downstream 1000 false Chr02: 54443363-54444362 Eucalyptus grandis
Eucgr.B03236 2.0kb upstream 2.0kb upstream 3069 true Chr02: 54440294-54443362 Eucalyptus grandis
Eucgr.B03236 2.0kb upstream 2.0kb upstream 2000 false Chr02: 54440294-54442293 Eucalyptus grandis
Eucgr.B03236 2.0kb downstream 2.0kb downstream 3069 true Chr02: 54442294-54445362 Eucalyptus grandis
Eucgr.B03236 2.0kb downstream 2.0kb downstream 2000 false Chr02: 54443363-54445362 Eucalyptus grandis
Eucgr.B03236 5.0kb upstream 5.0kb upstream 6069 true Chr02: 54437294-54443362 Eucalyptus grandis
Eucgr.B03236 5.0kb upstream 5.0kb upstream 5000 false Chr02: 54437294-54442293 Eucalyptus grandis
Eucgr.B03236 5.0kb downstream 5.0kb downstream 6069 true Chr02: 54442294-54448362 Eucalyptus grandis
Eucgr.B03236 5.0kb downstream 5.0kb downstream 5000 false Chr02: 54443363-54448362 Eucalyptus grandis
Eucgr.B03236 10.0kb upstream 10.0kb upstream 11069 true Chr02: 54432294-54443362 Eucalyptus grandis
Eucgr.B03236 10.0kb upstream 10.0kb upstream 10000 false Chr02: 54432294-54442293 Eucalyptus grandis
Eucgr.B03236 10.0kb downstream 10.0kb downstream 11069 true Chr02: 54442294-54453362 Eucalyptus grandis
Eucgr.B03236 10.0kb downstream 10.0kb downstream 10000 false Chr02: 54443363-54453362 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068149 5270 Rosid View MSA
123737018 5271 Pentapetalae View MSA
122795977 5272 Eudicot View MSA
122044260 5273 Angiosperm View MSA
121349394 5274 Embryophyte View MSA
123426328 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.6615 0.0 26.7798   Low
cufflinks 66.2187 0.0 146.537 High  
cufflinks 24.0771 0.0 56.2949    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 256.066 0.0 594.735 High High

0 Strain