Gene : Eucgr.C00108 E. grandis v2.0
Defline:  (1 of 1) PTHR10459:SF72 - DNA LIGASE 4 Genomic Order:  50
Name:  ? Eucgr.C00108 Secondary Identifier:  ? PAC:32038097
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C00108 0.5kb upstream 0.5kb upstream 9405 true Chr03: 717907-727311 Eucalyptus grandis
Eucgr.C00108 0.5kb upstream 0.5kb upstream 500 false Chr03: 726812-727311 Eucalyptus grandis
Eucgr.C00108 0.5kb downstream 0.5kb downstream 9405 true Chr03: 717407-726811 Eucalyptus grandis
Eucgr.C00108 0.5kb downstream 0.5kb downstream 500 false Chr03: 717407-717906 Eucalyptus grandis
Eucgr.C00108 1.0kb upstream 1.0kb upstream 9905 true Chr03: 717907-727811 Eucalyptus grandis
Eucgr.C00108 1.0kb upstream 1.0kb upstream 1000 false Chr03: 726812-727811 Eucalyptus grandis
Eucgr.C00108 1.0kb downstream 1.0kb downstream 9905 true Chr03: 716907-726811 Eucalyptus grandis
Eucgr.C00108 1.0kb downstream 1.0kb downstream 1000 false Chr03: 716907-717906 Eucalyptus grandis
Eucgr.C00108 2.0kb upstream 2.0kb upstream 10905 true Chr03: 717907-728811 Eucalyptus grandis
Eucgr.C00108 2.0kb upstream 2.0kb upstream 2000 false Chr03: 726812-728811 Eucalyptus grandis
Eucgr.C00108 2.0kb downstream 2.0kb downstream 10905 true Chr03: 715907-726811 Eucalyptus grandis
Eucgr.C00108 2.0kb downstream 2.0kb downstream 2000 false Chr03: 715907-717906 Eucalyptus grandis
Eucgr.C00108 5.0kb upstream 5.0kb upstream 13905 true Chr03: 717907-731811 Eucalyptus grandis
Eucgr.C00108 5.0kb upstream 5.0kb upstream 5000 false Chr03: 726812-731811 Eucalyptus grandis
Eucgr.C00108 5.0kb downstream 5.0kb downstream 13905 true Chr03: 712907-726811 Eucalyptus grandis
Eucgr.C00108 5.0kb downstream 5.0kb downstream 5000 false Chr03: 712907-717906 Eucalyptus grandis
Eucgr.C00108 10.0kb upstream 10.0kb upstream 18905 true Chr03: 717907-736811 Eucalyptus grandis
Eucgr.C00108 10.0kb upstream 10.0kb upstream 10000 false Chr03: 726812-736811 Eucalyptus grandis
Eucgr.C00108 10.0kb downstream 10.0kb downstream 18905 true Chr03: 707907-726811 Eucalyptus grandis
Eucgr.C00108 10.0kb downstream 10.0kb downstream 10000 false Chr03: 707907-717906 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066259 5270 Rosid View MSA
123748643 5271 Pentapetalae View MSA
122787045 5272 Eudicot View MSA
122045949 5273 Angiosperm View MSA
121346093 5274 Embryophyte View MSA
123426430 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.97825 0.0 11.532    
cufflinks 6.90903 0.0 15.6108    
cufflinks 6.39767 0.0 14.5169    
cufflinks 4.23838 0.0 9.88704   Low
cufflinks 7.12473 0.0 16.091   High
cufflinks 5.15345 0.0 11.9522    

0 Strain