Gene : Eucgr.C00074 E. grandis v2.0
Defline:  (1 of 2) PTHR24326:SF227 - HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 Genomic Order:  22
Name:  ? Eucgr.C00074 Secondary Identifier:  ? PAC:32039286
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C00074 0.5kb upstream 0.5kb upstream 1871 true Chr03: 349789-351659 Eucalyptus grandis
Eucgr.C00074 0.5kb upstream 0.5kb upstream 500 false Chr03: 351160-351659 Eucalyptus grandis
Eucgr.C00074 0.5kb downstream 0.5kb downstream 1871 true Chr03: 349289-351159 Eucalyptus grandis
Eucgr.C00074 0.5kb downstream 0.5kb downstream 500 false Chr03: 349289-349788 Eucalyptus grandis
Eucgr.C00074 1.0kb upstream 1.0kb upstream 2371 true Chr03: 349789-352159 Eucalyptus grandis
Eucgr.C00074 1.0kb upstream 1.0kb upstream 1000 false Chr03: 351160-352159 Eucalyptus grandis
Eucgr.C00074 1.0kb downstream 1.0kb downstream 2371 true Chr03: 348789-351159 Eucalyptus grandis
Eucgr.C00074 1.0kb downstream 1.0kb downstream 1000 false Chr03: 348789-349788 Eucalyptus grandis
Eucgr.C00074 2.0kb upstream 2.0kb upstream 3371 true Chr03: 349789-353159 Eucalyptus grandis
Eucgr.C00074 2.0kb upstream 2.0kb upstream 2000 false Chr03: 351160-353159 Eucalyptus grandis
Eucgr.C00074 2.0kb downstream 2.0kb downstream 3371 true Chr03: 347789-351159 Eucalyptus grandis
Eucgr.C00074 2.0kb downstream 2.0kb downstream 2000 false Chr03: 347789-349788 Eucalyptus grandis
Eucgr.C00074 5.0kb upstream 5.0kb upstream 6371 true Chr03: 349789-356159 Eucalyptus grandis
Eucgr.C00074 5.0kb upstream 5.0kb upstream 5000 false Chr03: 351160-356159 Eucalyptus grandis
Eucgr.C00074 5.0kb downstream 5.0kb downstream 6371 true Chr03: 344789-351159 Eucalyptus grandis
Eucgr.C00074 5.0kb downstream 5.0kb downstream 5000 false Chr03: 344789-349788 Eucalyptus grandis
Eucgr.C00074 10.0kb upstream 10.0kb upstream 11371 true Chr03: 349789-361159 Eucalyptus grandis
Eucgr.C00074 10.0kb upstream 10.0kb upstream 10000 false Chr03: 351160-361159 Eucalyptus grandis
Eucgr.C00074 10.0kb downstream 10.0kb downstream 11371 true Chr03: 339789-351159 Eucalyptus grandis
Eucgr.C00074 10.0kb downstream 10.0kb downstream 10000 false Chr03: 339789-349788 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028268 5273 Angiosperm View MSA
124050652 5270 Rosid View MSA
123752809 5271 Pentapetalae View MSA
122797048 5272 Eudicot View MSA
121351534 5274 Embryophyte View MSA
123382211 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.4994 0.0 24.8075    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 8.81861 0.0 21.1895    
cufflinks 0.695755 0.0 2.18021   Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.19434 0.0 3.53118    

0 Strain