Gene : Eucgr.B03930 E. grandis v2.0
Defline:  (1 of 1) PTHR10003:SF34 - SUPEROXIDE DISMUTASE [CU-ZN] 2, CHLOROPLASTIC Genomic Order:  3186
Name:  ? Eucgr.B03930 Secondary Identifier:  ? PAC:32060559
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis DETOX1-PWY Eucalyptus grandis pathologic  
Egrandis DETOX1-PWY-1 Eucalyptus grandis pathologic  
Egrandis PWY-6854 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.B03930 0.5kb upstream 0.5kb upstream 4017 true Chr02: 58489666-58493682 Eucalyptus grandis
Eucgr.B03930 0.5kb upstream 0.5kb upstream 500 false Chr02: 58493183-58493682 Eucalyptus grandis
Eucgr.B03930 0.5kb downstream 0.5kb downstream 4017 true Chr02: 58489166-58493182 Eucalyptus grandis
Eucgr.B03930 0.5kb downstream 0.5kb downstream 500 false Chr02: 58489166-58489665 Eucalyptus grandis
Eucgr.B03930 1.0kb upstream 1.0kb upstream 4517 true Chr02: 58489666-58494182 Eucalyptus grandis
Eucgr.B03930 1.0kb upstream 1.0kb upstream 1000 false Chr02: 58493183-58494182 Eucalyptus grandis
Eucgr.B03930 1.0kb downstream 1.0kb downstream 4517 true Chr02: 58488666-58493182 Eucalyptus grandis
Eucgr.B03930 1.0kb downstream 1.0kb downstream 1000 false Chr02: 58488666-58489665 Eucalyptus grandis
Eucgr.B03930 2.0kb upstream 2.0kb upstream 5517 true Chr02: 58489666-58495182 Eucalyptus grandis
Eucgr.B03930 2.0kb upstream 2.0kb upstream 2000 false Chr02: 58493183-58495182 Eucalyptus grandis
Eucgr.B03930 2.0kb downstream 2.0kb downstream 5517 true Chr02: 58487666-58493182 Eucalyptus grandis
Eucgr.B03930 2.0kb downstream 2.0kb downstream 2000 false Chr02: 58487666-58489665 Eucalyptus grandis
Eucgr.B03930 5.0kb upstream 5.0kb upstream 8517 true Chr02: 58489666-58498182 Eucalyptus grandis
Eucgr.B03930 5.0kb upstream 5.0kb upstream 5000 false Chr02: 58493183-58498182 Eucalyptus grandis
Eucgr.B03930 5.0kb downstream 5.0kb downstream 8517 true Chr02: 58484666-58493182 Eucalyptus grandis
Eucgr.B03930 5.0kb downstream 5.0kb downstream 5000 false Chr02: 58484666-58489665 Eucalyptus grandis
Eucgr.B03930 10.0kb upstream 10.0kb upstream 13517 true Chr02: 58489666-58503182 Eucalyptus grandis
Eucgr.B03930 10.0kb upstream 10.0kb upstream 10000 false Chr02: 58493183-58503182 Eucalyptus grandis
Eucgr.B03930 10.0kb downstream 10.0kb downstream 13517 true Chr02: 58479666-58493182 Eucalyptus grandis
Eucgr.B03930 10.0kb downstream 10.0kb downstream 10000 false Chr02: 58479666-58489665 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124067425 5270 Rosid View MSA
123737273 5271 Pentapetalae View MSA
122788875 5272 Eudicot View MSA
122047736 5273 Angiosperm View MSA
121347419 5274 Embryophyte View MSA
123427939 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 156.854 0.0 505.826 High  
cufflinks 109.033 0.0 332.776 High  
cufflinks 106.505 0.0 347.195 High  
cufflinks 128.583 0.0 364.19 High  
cufflinks 141.282 0.0 427.954 High  
cufflinks 279.739 0.0 952.591 High High

0 Strain