Gene : Eucgr.B03924 E. grandis v2.0
Defline:  (1 of 1) PTHR21266:SF24 - PHEOPHORBIDE A OXYGENASE, CHLOROPLASTIC Genomic Order:  3181
Name:  ? Eucgr.B03924 Secondary Identifier:  ? PAC:32059933
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-5098 Eucalyptus grandis pathologic  
Egrandis PWY-6927 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.B03924 0.5kb upstream 0.5kb upstream 5651 true Chr02: 58457474-58463124 Eucalyptus grandis
Eucgr.B03924 0.5kb upstream 0.5kb upstream 500 false Chr02: 58457474-58457973 Eucalyptus grandis
Eucgr.B03924 0.5kb downstream 0.5kb downstream 5651 true Chr02: 58457974-58463624 Eucalyptus grandis
Eucgr.B03924 0.5kb downstream 0.5kb downstream 500 false Chr02: 58463125-58463624 Eucalyptus grandis
Eucgr.B03924 1.0kb upstream 1.0kb upstream 6151 true Chr02: 58456974-58463124 Eucalyptus grandis
Eucgr.B03924 1.0kb upstream 1.0kb upstream 1000 false Chr02: 58456974-58457973 Eucalyptus grandis
Eucgr.B03924 1.0kb downstream 1.0kb downstream 6151 true Chr02: 58457974-58464124 Eucalyptus grandis
Eucgr.B03924 1.0kb downstream 1.0kb downstream 1000 false Chr02: 58463125-58464124 Eucalyptus grandis
Eucgr.B03924 2.0kb upstream 2.0kb upstream 7151 true Chr02: 58455974-58463124 Eucalyptus grandis
Eucgr.B03924 2.0kb upstream 2.0kb upstream 2000 false Chr02: 58455974-58457973 Eucalyptus grandis
Eucgr.B03924 2.0kb downstream 2.0kb downstream 7151 true Chr02: 58457974-58465124 Eucalyptus grandis
Eucgr.B03924 2.0kb downstream 2.0kb downstream 2000 false Chr02: 58463125-58465124 Eucalyptus grandis
Eucgr.B03924 5.0kb upstream 5.0kb upstream 10151 true Chr02: 58452974-58463124 Eucalyptus grandis
Eucgr.B03924 5.0kb upstream 5.0kb upstream 5000 false Chr02: 58452974-58457973 Eucalyptus grandis
Eucgr.B03924 5.0kb downstream 5.0kb downstream 10151 true Chr02: 58457974-58468124 Eucalyptus grandis
Eucgr.B03924 5.0kb downstream 5.0kb downstream 5000 false Chr02: 58463125-58468124 Eucalyptus grandis
Eucgr.B03924 10.0kb upstream 10.0kb upstream 15151 true Chr02: 58447974-58463124 Eucalyptus grandis
Eucgr.B03924 10.0kb upstream 10.0kb upstream 10000 false Chr02: 58447974-58457973 Eucalyptus grandis
Eucgr.B03924 10.0kb downstream 10.0kb downstream 15151 true Chr02: 58457974-58473124 Eucalyptus grandis
Eucgr.B03924 10.0kb downstream 10.0kb downstream 10000 false Chr02: 58463125-58473124 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124063848 5270 Rosid View MSA
123748606 5271 Pentapetalae View MSA
122790785 5272 Eudicot View MSA
122042360 5273 Angiosperm View MSA
123429167 5275 Viridiplantae View MSA
121346632 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.081 0.0 47.8036    
cufflinks 7.69393 0.0 19.4677    
cufflinks 13.6738 0.0 40.1031    
cufflinks 9.79491 0.0 23.1089    
cufflinks 13.975 0.0 33.1112    
cufflinks 56.4045 0.0 128.258 High High

0 Strain