Gene : Eucgr.C00545 E. grandis v2.0
Defline:  (1 of 14) 1.13.11.51 - 9-cis-epoxycarotenoid dioxygenase / VP14 Genomic Order:  389
Name:  ? Eucgr.C00545 Secondary Identifier:  ? PAC:32037704
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-695 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C00545 0.5kb upstream 0.5kb upstream 3893 true Chr03: 8678030-8681922 Eucalyptus grandis
Eucgr.C00545 0.5kb upstream 0.5kb upstream 500 false Chr03: 8681423-8681922 Eucalyptus grandis
Eucgr.C00545 0.5kb downstream 0.5kb downstream 3893 true Chr03: 8677530-8681422 Eucalyptus grandis
Eucgr.C00545 0.5kb downstream 0.5kb downstream 500 false Chr03: 8677530-8678029 Eucalyptus grandis
Eucgr.C00545 1.0kb upstream 1.0kb upstream 4393 true Chr03: 8678030-8682422 Eucalyptus grandis
Eucgr.C00545 1.0kb upstream 1.0kb upstream 1000 false Chr03: 8681423-8682422 Eucalyptus grandis
Eucgr.C00545 1.0kb downstream 1.0kb downstream 4393 true Chr03: 8677030-8681422 Eucalyptus grandis
Eucgr.C00545 1.0kb downstream 1.0kb downstream 1000 false Chr03: 8677030-8678029 Eucalyptus grandis
Eucgr.C00545 2.0kb upstream 2.0kb upstream 5393 true Chr03: 8678030-8683422 Eucalyptus grandis
Eucgr.C00545 2.0kb upstream 2.0kb upstream 2000 false Chr03: 8681423-8683422 Eucalyptus grandis
Eucgr.C00545 2.0kb downstream 2.0kb downstream 5393 true Chr03: 8676030-8681422 Eucalyptus grandis
Eucgr.C00545 2.0kb downstream 2.0kb downstream 2000 false Chr03: 8676030-8678029 Eucalyptus grandis
Eucgr.C00545 5.0kb upstream 5.0kb upstream 8393 true Chr03: 8678030-8686422 Eucalyptus grandis
Eucgr.C00545 5.0kb upstream 5.0kb upstream 5000 false Chr03: 8681423-8686422 Eucalyptus grandis
Eucgr.C00545 5.0kb downstream 5.0kb downstream 8393 true Chr03: 8673030-8681422 Eucalyptus grandis
Eucgr.C00545 5.0kb downstream 5.0kb downstream 5000 false Chr03: 8673030-8678029 Eucalyptus grandis
Eucgr.C00545 10.0kb upstream 10.0kb upstream 13393 true Chr03: 8678030-8691422 Eucalyptus grandis
Eucgr.C00545 10.0kb upstream 10.0kb upstream 10000 false Chr03: 8681423-8691422 Eucalyptus grandis
Eucgr.C00545 10.0kb downstream 10.0kb downstream 13393 true Chr03: 8668030-8681422 Eucalyptus grandis
Eucgr.C00545 10.0kb downstream 10.0kb downstream 10000 false Chr03: 8668030-8678029 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124074147 5270 Rosid View MSA
123748697 5271 Pentapetalae View MSA
122795171 5272 Eudicot View MSA
122051607 5273 Angiosperm View MSA
121349725 5274 Embryophyte View MSA
123381417 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain