Gene : Eucgr.C00228 E. grandis v2.0
Defline:  (1 of 1) PTHR22760:SF4 - GPI MANNOSYLTRANSFERASE 3 Genomic Order:  160
Name:  ? Eucgr.C00228 Secondary Identifier:  ? PAC:32037965
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C00228 0.5kb upstream 0.5kb upstream 4140 true Chr03: 1886715-1890854 Eucalyptus grandis
Eucgr.C00228 0.5kb upstream 0.5kb upstream 500 false Chr03: 1886715-1887214 Eucalyptus grandis
Eucgr.C00228 0.5kb downstream 0.5kb downstream 4140 true Chr03: 1887215-1891354 Eucalyptus grandis
Eucgr.C00228 0.5kb downstream 0.5kb downstream 500 false Chr03: 1890855-1891354 Eucalyptus grandis
Eucgr.C00228 1.0kb upstream 1.0kb upstream 4640 true Chr03: 1886215-1890854 Eucalyptus grandis
Eucgr.C00228 1.0kb upstream 1.0kb upstream 1000 false Chr03: 1886215-1887214 Eucalyptus grandis
Eucgr.C00228 1.0kb downstream 1.0kb downstream 4640 true Chr03: 1887215-1891854 Eucalyptus grandis
Eucgr.C00228 1.0kb downstream 1.0kb downstream 1000 false Chr03: 1890855-1891854 Eucalyptus grandis
Eucgr.C00228 2.0kb upstream 2.0kb upstream 5640 true Chr03: 1885215-1890854 Eucalyptus grandis
Eucgr.C00228 2.0kb upstream 2.0kb upstream 2000 false Chr03: 1885215-1887214 Eucalyptus grandis
Eucgr.C00228 2.0kb downstream 2.0kb downstream 5640 true Chr03: 1887215-1892854 Eucalyptus grandis
Eucgr.C00228 2.0kb downstream 2.0kb downstream 2000 false Chr03: 1890855-1892854 Eucalyptus grandis
Eucgr.C00228 5.0kb upstream 5.0kb upstream 8640 true Chr03: 1882215-1890854 Eucalyptus grandis
Eucgr.C00228 5.0kb upstream 5.0kb upstream 5000 false Chr03: 1882215-1887214 Eucalyptus grandis
Eucgr.C00228 5.0kb downstream 5.0kb downstream 8640 true Chr03: 1887215-1895854 Eucalyptus grandis
Eucgr.C00228 5.0kb downstream 5.0kb downstream 5000 false Chr03: 1890855-1895854 Eucalyptus grandis
Eucgr.C00228 10.0kb upstream 10.0kb upstream 13640 true Chr03: 1877215-1890854 Eucalyptus grandis
Eucgr.C00228 10.0kb upstream 10.0kb upstream 10000 false Chr03: 1877215-1887214 Eucalyptus grandis
Eucgr.C00228 10.0kb downstream 10.0kb downstream 13640 true Chr03: 1887215-1900854 Eucalyptus grandis
Eucgr.C00228 10.0kb downstream 10.0kb downstream 10000 false Chr03: 1890855-1900854 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065549 5270 Rosid View MSA
123737341 5271 Pentapetalae View MSA
122796897 5272 Eudicot View MSA
122042871 5273 Angiosperm View MSA
121346274 5274 Embryophyte View MSA
123425289 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.21456 0.0 14.9505    
cufflinks 9.75951 0.0 22.4372   High
cufflinks 5.54777 0.0 13.4424    
cufflinks 7.21653 0.0 16.9872    
cufflinks 7.13013 0.0 16.8573    
cufflinks 4.22504 0.0 10.6038   Low

0 Strain