Gene : Eucgr.C00232 E. grandis v2.0
Defline:  (1 of 1) PTHR11570//PTHR11570:SF3 - S-ADENOSYLMETHIONINE DECARBOXYLASE Genomic Order:  163
Name:  ? Eucgr.C00232 Secondary Identifier:  ? PAC:32037508
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis BSUBPOLYAMSYN-PWY Eucalyptus grandis pathologic  
Egrandis PWY-7528 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C00232 0.5kb upstream 0.5kb upstream 2686 true Chr03: 1917118-1919803 Eucalyptus grandis
Eucgr.C00232 0.5kb upstream 0.5kb upstream 500 false Chr03: 1917118-1917617 Eucalyptus grandis
Eucgr.C00232 0.5kb downstream 0.5kb downstream 2686 true Chr03: 1917618-1920303 Eucalyptus grandis
Eucgr.C00232 0.5kb downstream 0.5kb downstream 500 false Chr03: 1919804-1920303 Eucalyptus grandis
Eucgr.C00232 1.0kb upstream 1.0kb upstream 3186 true Chr03: 1916618-1919803 Eucalyptus grandis
Eucgr.C00232 1.0kb upstream 1.0kb upstream 1000 false Chr03: 1916618-1917617 Eucalyptus grandis
Eucgr.C00232 1.0kb downstream 1.0kb downstream 3186 true Chr03: 1917618-1920803 Eucalyptus grandis
Eucgr.C00232 1.0kb downstream 1.0kb downstream 1000 false Chr03: 1919804-1920803 Eucalyptus grandis
Eucgr.C00232 2.0kb upstream 2.0kb upstream 4186 true Chr03: 1915618-1919803 Eucalyptus grandis
Eucgr.C00232 2.0kb upstream 2.0kb upstream 2000 false Chr03: 1915618-1917617 Eucalyptus grandis
Eucgr.C00232 2.0kb downstream 2.0kb downstream 4186 true Chr03: 1917618-1921803 Eucalyptus grandis
Eucgr.C00232 2.0kb downstream 2.0kb downstream 2000 false Chr03: 1919804-1921803 Eucalyptus grandis
Eucgr.C00232 5.0kb upstream 5.0kb upstream 7186 true Chr03: 1912618-1919803 Eucalyptus grandis
Eucgr.C00232 5.0kb upstream 5.0kb upstream 5000 false Chr03: 1912618-1917617 Eucalyptus grandis
Eucgr.C00232 5.0kb downstream 5.0kb downstream 7186 true Chr03: 1917618-1924803 Eucalyptus grandis
Eucgr.C00232 5.0kb downstream 5.0kb downstream 5000 false Chr03: 1919804-1924803 Eucalyptus grandis
Eucgr.C00232 10.0kb upstream 10.0kb upstream 12186 true Chr03: 1907618-1919803 Eucalyptus grandis
Eucgr.C00232 10.0kb upstream 10.0kb upstream 10000 false Chr03: 1907618-1917617 Eucalyptus grandis
Eucgr.C00232 10.0kb downstream 10.0kb downstream 12186 true Chr03: 1917618-1929803 Eucalyptus grandis
Eucgr.C00232 10.0kb downstream 10.0kb downstream 10000 false Chr03: 1919804-1929803 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124070992 5270 Rosid View MSA
123742388 5271 Pentapetalae View MSA
122794045 5272 Eudicot View MSA
122049143 5273 Angiosperm View MSA
121348944 5274 Embryophyte View MSA
123423800 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.09725 0.0 5.97244   Low
cufflinks 176.432 0.0 421.659 High  
cufflinks 11.2236 0.0 26.0428    
cufflinks 230.084 0.0 705.345 High High
cufflinks 71.9944 0.0 170.808 High  
cufflinks 4.58059 0.0 11.547    

0 Strain