Gene : Eucgr.C01002 E. grandis v2.0
Defline:  (1 of 3) 1.14.11.6 - Thymine dioxygenase / Thymine,2-oxoglutarate dioxygenase Genomic Order:  827
Name:  ? Eucgr.C01002 Secondary Identifier:  ? PAC:32038642
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis ETHYL-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C01002 0.5kb upstream 0.5kb upstream 5098 true Chr03: 16059837-16064934 Eucalyptus grandis
Eucgr.C01002 0.5kb upstream 0.5kb upstream 500 false Chr03: 16059837-16060336 Eucalyptus grandis
Eucgr.C01002 0.5kb downstream 0.5kb downstream 5098 true Chr03: 16060337-16065434 Eucalyptus grandis
Eucgr.C01002 0.5kb downstream 0.5kb downstream 500 false Chr03: 16064935-16065434 Eucalyptus grandis
Eucgr.C01002 1.0kb upstream 1.0kb upstream 5598 true Chr03: 16059337-16064934 Eucalyptus grandis
Eucgr.C01002 1.0kb upstream 1.0kb upstream 1000 false Chr03: 16059337-16060336 Eucalyptus grandis
Eucgr.C01002 1.0kb downstream 1.0kb downstream 5598 true Chr03: 16060337-16065934 Eucalyptus grandis
Eucgr.C01002 1.0kb downstream 1.0kb downstream 1000 false Chr03: 16064935-16065934 Eucalyptus grandis
Eucgr.C01002 2.0kb upstream 2.0kb upstream 6598 true Chr03: 16058337-16064934 Eucalyptus grandis
Eucgr.C01002 2.0kb upstream 2.0kb upstream 2000 false Chr03: 16058337-16060336 Eucalyptus grandis
Eucgr.C01002 2.0kb downstream 2.0kb downstream 6598 true Chr03: 16060337-16066934 Eucalyptus grandis
Eucgr.C01002 2.0kb downstream 2.0kb downstream 2000 false Chr03: 16064935-16066934 Eucalyptus grandis
Eucgr.C01002 5.0kb upstream 5.0kb upstream 9598 true Chr03: 16055337-16064934 Eucalyptus grandis
Eucgr.C01002 5.0kb upstream 5.0kb upstream 5000 false Chr03: 16055337-16060336 Eucalyptus grandis
Eucgr.C01002 5.0kb downstream 5.0kb downstream 9598 true Chr03: 16060337-16069934 Eucalyptus grandis
Eucgr.C01002 5.0kb downstream 5.0kb downstream 5000 false Chr03: 16064935-16069934 Eucalyptus grandis
Eucgr.C01002 10.0kb upstream 10.0kb upstream 14598 true Chr03: 16050337-16064934 Eucalyptus grandis
Eucgr.C01002 10.0kb upstream 10.0kb upstream 10000 false Chr03: 16050337-16060336 Eucalyptus grandis
Eucgr.C01002 10.0kb downstream 10.0kb downstream 14598 true Chr03: 16060337-16074934 Eucalyptus grandis
Eucgr.C01002 10.0kb downstream 10.0kb downstream 10000 false Chr03: 16064935-16074934 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124061088 5270 Rosid View MSA
123745959 5271 Pentapetalae View MSA
122787426 5272 Eudicot View MSA
122044176 5273 Angiosperm View MSA
123429101 5275 Viridiplantae View MSA
121345815 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 57.3261 0.0 145.575 High High
cufflinks 7.63148 0.0 21.4563    
cufflinks 58.0093 0.0 146.556 High High
cufflinks 10.3161 0.0 27.9909    
cufflinks 6.45895 0.0 20.5412   Low
cufflinks 28.6941 0.0 84.3324    

0 Strain