Gene : Eucgr.C00889 E. grandis v2.0
Defline:  (1 of 235) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  733
Name:  ? Eucgr.C00889 Secondary Identifier:  ? PAC:32039705
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C00889 0.5kb upstream 0.5kb upstream 2372 true Chr03: 14293366-14295737 Eucalyptus grandis
Eucgr.C00889 0.5kb upstream 0.5kb upstream 500 false Chr03: 14293366-14293865 Eucalyptus grandis
Eucgr.C00889 0.5kb downstream 0.5kb downstream 2372 true Chr03: 14293866-14296237 Eucalyptus grandis
Eucgr.C00889 0.5kb downstream 0.5kb downstream 500 false Chr03: 14295738-14296237 Eucalyptus grandis
Eucgr.C00889 1.0kb upstream 1.0kb upstream 2872 true Chr03: 14292866-14295737 Eucalyptus grandis
Eucgr.C00889 1.0kb upstream 1.0kb upstream 1000 false Chr03: 14292866-14293865 Eucalyptus grandis
Eucgr.C00889 1.0kb downstream 1.0kb downstream 2872 true Chr03: 14293866-14296737 Eucalyptus grandis
Eucgr.C00889 1.0kb downstream 1.0kb downstream 1000 false Chr03: 14295738-14296737 Eucalyptus grandis
Eucgr.C00889 2.0kb upstream 2.0kb upstream 3872 true Chr03: 14291866-14295737 Eucalyptus grandis
Eucgr.C00889 2.0kb upstream 2.0kb upstream 2000 false Chr03: 14291866-14293865 Eucalyptus grandis
Eucgr.C00889 2.0kb downstream 2.0kb downstream 3872 true Chr03: 14293866-14297737 Eucalyptus grandis
Eucgr.C00889 2.0kb downstream 2.0kb downstream 2000 false Chr03: 14295738-14297737 Eucalyptus grandis
Eucgr.C00889 5.0kb upstream 5.0kb upstream 6872 true Chr03: 14288866-14295737 Eucalyptus grandis
Eucgr.C00889 5.0kb upstream 5.0kb upstream 5000 false Chr03: 14288866-14293865 Eucalyptus grandis
Eucgr.C00889 5.0kb downstream 5.0kb downstream 6872 true Chr03: 14293866-14300737 Eucalyptus grandis
Eucgr.C00889 5.0kb downstream 5.0kb downstream 5000 false Chr03: 14295738-14300737 Eucalyptus grandis
Eucgr.C00889 10.0kb upstream 10.0kb upstream 11872 true Chr03: 14283866-14295737 Eucalyptus grandis
Eucgr.C00889 10.0kb upstream 10.0kb upstream 10000 false Chr03: 14283866-14293865 Eucalyptus grandis
Eucgr.C00889 10.0kb downstream 10.0kb downstream 11872 true Chr03: 14293866-14305737 Eucalyptus grandis
Eucgr.C00889 10.0kb downstream 10.0kb downstream 10000 false Chr03: 14295738-14305737 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026168 5273 Angiosperm View MSA
124060726 5270 Rosid View MSA
123739079 5271 Pentapetalae View MSA
122791557 5272 Eudicot View MSA
121296211 5274 Embryophyte View MSA
123334413 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.63038 0.0 11.4544    
cufflinks 2.72248 0.0 7.02161   Low
cufflinks 5.30471 0.0 12.8735    
cufflinks 2.67045 0.0 6.89341   Low
cufflinks 7.0059 0.0 16.5621   High
cufflinks 5.97729 0.0 14.5392    

0 Strain