Gene : Eucgr.C00874 E. grandis v2.0
Defline:  (1 of 3) PTHR22942:SF1 - MITOCHONDRIAL DNA REPAIR PROTEIN RECA HOMOLOG Genomic Order:  722
Name:  ? Eucgr.C00874 Secondary Identifier:  ? PAC:32038214
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C00874 0.5kb upstream 0.5kb upstream 5315 true Chr03: 14118169-14123483 Eucalyptus grandis
Eucgr.C00874 0.5kb upstream 0.5kb upstream 500 false Chr03: 14118169-14118668 Eucalyptus grandis
Eucgr.C00874 0.5kb downstream 0.5kb downstream 5315 true Chr03: 14118669-14123983 Eucalyptus grandis
Eucgr.C00874 0.5kb downstream 0.5kb downstream 500 false Chr03: 14123484-14123983 Eucalyptus grandis
Eucgr.C00874 1.0kb upstream 1.0kb upstream 5815 true Chr03: 14117669-14123483 Eucalyptus grandis
Eucgr.C00874 1.0kb upstream 1.0kb upstream 1000 false Chr03: 14117669-14118668 Eucalyptus grandis
Eucgr.C00874 1.0kb downstream 1.0kb downstream 5815 true Chr03: 14118669-14124483 Eucalyptus grandis
Eucgr.C00874 1.0kb downstream 1.0kb downstream 1000 false Chr03: 14123484-14124483 Eucalyptus grandis
Eucgr.C00874 2.0kb upstream 2.0kb upstream 6815 true Chr03: 14116669-14123483 Eucalyptus grandis
Eucgr.C00874 2.0kb upstream 2.0kb upstream 2000 false Chr03: 14116669-14118668 Eucalyptus grandis
Eucgr.C00874 2.0kb downstream 2.0kb downstream 6815 true Chr03: 14118669-14125483 Eucalyptus grandis
Eucgr.C00874 2.0kb downstream 2.0kb downstream 2000 false Chr03: 14123484-14125483 Eucalyptus grandis
Eucgr.C00874 5.0kb upstream 5.0kb upstream 9815 true Chr03: 14113669-14123483 Eucalyptus grandis
Eucgr.C00874 5.0kb upstream 5.0kb upstream 5000 false Chr03: 14113669-14118668 Eucalyptus grandis
Eucgr.C00874 5.0kb downstream 5.0kb downstream 9815 true Chr03: 14118669-14128483 Eucalyptus grandis
Eucgr.C00874 5.0kb downstream 5.0kb downstream 5000 false Chr03: 14123484-14128483 Eucalyptus grandis
Eucgr.C00874 10.0kb upstream 10.0kb upstream 14815 true Chr03: 14108669-14123483 Eucalyptus grandis
Eucgr.C00874 10.0kb upstream 10.0kb upstream 10000 false Chr03: 14108669-14118668 Eucalyptus grandis
Eucgr.C00874 10.0kb downstream 10.0kb downstream 14815 true Chr03: 14118669-14133483 Eucalyptus grandis
Eucgr.C00874 10.0kb downstream 10.0kb downstream 10000 false Chr03: 14123484-14133483 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124060910 5270 Rosid View MSA
123743404 5271 Pentapetalae View MSA
122790818 5272 Eudicot View MSA
122045748 5273 Angiosperm View MSA
121351318 5274 Embryophyte View MSA
123382118 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.7984 0.0 32.4843    
cufflinks 6.82527 0.0 16.2695   Low
cufflinks 15.238 0.0 35.3702    
cufflinks 7.00741 0.0 16.6472   Low
cufflinks 18.0877 0.0 41.385   High
cufflinks 9.23054 0.0 21.4955    

0 Strain