Gene : Eucgr.C00793 E. grandis v2.0
Defline:  (1 of 1) 5.3.1.23 - S-methyl-5-thioribose-1-phosphate isomerase / S-methyl-5-thio-D-ribose-1-phosphate aldose-ketose-isomerase Genomic Order:  650
Name:  ? Eucgr.C00793 Secondary Identifier:  ? PAC:32039112
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-4361 Eucalyptus grandis pathologic  
Egrandis PWY-7270 Eucalyptus grandis pathologic  
Egrandis PWY-7528 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C00793 0.5kb upstream 0.5kb upstream 5123 true Chr03: 13294772-13299894 Eucalyptus grandis
Eucgr.C00793 0.5kb upstream 0.5kb upstream 500 false Chr03: 13294772-13295271 Eucalyptus grandis
Eucgr.C00793 0.5kb downstream 0.5kb downstream 5123 true Chr03: 13295272-13300394 Eucalyptus grandis
Eucgr.C00793 0.5kb downstream 0.5kb downstream 500 false Chr03: 13299895-13300394 Eucalyptus grandis
Eucgr.C00793 1.0kb upstream 1.0kb upstream 5623 true Chr03: 13294272-13299894 Eucalyptus grandis
Eucgr.C00793 1.0kb upstream 1.0kb upstream 1000 false Chr03: 13294272-13295271 Eucalyptus grandis
Eucgr.C00793 1.0kb downstream 1.0kb downstream 5623 true Chr03: 13295272-13300894 Eucalyptus grandis
Eucgr.C00793 1.0kb downstream 1.0kb downstream 1000 false Chr03: 13299895-13300894 Eucalyptus grandis
Eucgr.C00793 2.0kb upstream 2.0kb upstream 6623 true Chr03: 13293272-13299894 Eucalyptus grandis
Eucgr.C00793 2.0kb upstream 2.0kb upstream 2000 false Chr03: 13293272-13295271 Eucalyptus grandis
Eucgr.C00793 2.0kb downstream 2.0kb downstream 6623 true Chr03: 13295272-13301894 Eucalyptus grandis
Eucgr.C00793 2.0kb downstream 2.0kb downstream 2000 false Chr03: 13299895-13301894 Eucalyptus grandis
Eucgr.C00793 5.0kb upstream 5.0kb upstream 9623 true Chr03: 13290272-13299894 Eucalyptus grandis
Eucgr.C00793 5.0kb upstream 5.0kb upstream 5000 false Chr03: 13290272-13295271 Eucalyptus grandis
Eucgr.C00793 5.0kb downstream 5.0kb downstream 9623 true Chr03: 13295272-13304894 Eucalyptus grandis
Eucgr.C00793 5.0kb downstream 5.0kb downstream 5000 false Chr03: 13299895-13304894 Eucalyptus grandis
Eucgr.C00793 10.0kb upstream 10.0kb upstream 14623 true Chr03: 13285272-13299894 Eucalyptus grandis
Eucgr.C00793 10.0kb upstream 10.0kb upstream 10000 false Chr03: 13285272-13295271 Eucalyptus grandis
Eucgr.C00793 10.0kb downstream 10.0kb downstream 14623 true Chr03: 13295272-13309894 Eucalyptus grandis
Eucgr.C00793 10.0kb downstream 10.0kb downstream 10000 false Chr03: 13299895-13309894 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124060423 5270 Rosid View MSA
123740094 5271 Pentapetalae View MSA
122788864 5272 Eudicot View MSA
122043863 5273 Angiosperm View MSA
121310201 5274 Embryophyte View MSA
123428305 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.9012 0.0 46.595   Low
cufflinks 23.0529 0.0 51.2284    
cufflinks 25.2013 0.0 55.9204   High
cufflinks 24.2102 0.0 53.7528    
cufflinks 24.906 0.0 55.279    
cufflinks 20.8694 0.0 46.5588   Low

0 Strain