Gene : Eucgr.C00660 E. grandis v2.0
Defline:  (1 of 1) PTHR23076//PTHR23076:SF73 - METALLOPROTEASE M41 FTSH Genomic Order:  534
Name:  ? Eucgr.C00660 Secondary Identifier:  ? PAC:32037426
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C00660 0.5kb upstream 0.5kb upstream 7291 true Chr03: 11947909-11955199 Eucalyptus grandis
Eucgr.C00660 0.5kb upstream 0.5kb upstream 500 false Chr03: 11954700-11955199 Eucalyptus grandis
Eucgr.C00660 0.5kb downstream 0.5kb downstream 7291 true Chr03: 11947409-11954699 Eucalyptus grandis
Eucgr.C00660 0.5kb downstream 0.5kb downstream 500 false Chr03: 11947409-11947908 Eucalyptus grandis
Eucgr.C00660 1.0kb upstream 1.0kb upstream 7791 true Chr03: 11947909-11955699 Eucalyptus grandis
Eucgr.C00660 1.0kb upstream 1.0kb upstream 1000 false Chr03: 11954700-11955699 Eucalyptus grandis
Eucgr.C00660 1.0kb downstream 1.0kb downstream 7791 true Chr03: 11946909-11954699 Eucalyptus grandis
Eucgr.C00660 1.0kb downstream 1.0kb downstream 1000 false Chr03: 11946909-11947908 Eucalyptus grandis
Eucgr.C00660 2.0kb upstream 2.0kb upstream 8791 true Chr03: 11947909-11956699 Eucalyptus grandis
Eucgr.C00660 2.0kb upstream 2.0kb upstream 2000 false Chr03: 11954700-11956699 Eucalyptus grandis
Eucgr.C00660 2.0kb downstream 2.0kb downstream 8791 true Chr03: 11945909-11954699 Eucalyptus grandis
Eucgr.C00660 2.0kb downstream 2.0kb downstream 2000 false Chr03: 11945909-11947908 Eucalyptus grandis
Eucgr.C00660 5.0kb upstream 5.0kb upstream 11791 true Chr03: 11947909-11959699 Eucalyptus grandis
Eucgr.C00660 5.0kb upstream 5.0kb upstream 5000 false Chr03: 11954700-11959699 Eucalyptus grandis
Eucgr.C00660 5.0kb downstream 5.0kb downstream 11791 true Chr03: 11942909-11954699 Eucalyptus grandis
Eucgr.C00660 5.0kb downstream 5.0kb downstream 5000 false Chr03: 11942909-11947908 Eucalyptus grandis
Eucgr.C00660 10.0kb upstream 10.0kb upstream 16791 true Chr03: 11947909-11964699 Eucalyptus grandis
Eucgr.C00660 10.0kb upstream 10.0kb upstream 10000 false Chr03: 11954700-11964699 Eucalyptus grandis
Eucgr.C00660 10.0kb downstream 10.0kb downstream 16791 true Chr03: 11937909-11954699 Eucalyptus grandis
Eucgr.C00660 10.0kb downstream 10.0kb downstream 10000 false Chr03: 11937909-11947908 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124073797 5270 Rosid View MSA
123744222 5271 Pentapetalae View MSA
122793624 5272 Eudicot View MSA
122043793 5273 Angiosperm View MSA
121346284 5274 Embryophyte View MSA
123428638 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.1665 0.0 71.6199 High High
cufflinks 14.1929 0.0 31.4769   Low
cufflinks 24.9663 0.0 55.3154    
cufflinks 17.9027 0.0 39.5929    
cufflinks 15.9367 0.0 35.2983    
cufflinks 30.4696 0.0 67.6807   High

0 Strain