Gene : Eucgr.C00651 E. grandis v2.0
Defline:  (1 of 11) PF05553//PF14364 - Cotton fibre expressed protein (DUF761) // Domain of unknown function (DUF4408) (DUF4408) Genomic Order:  525
Name:  ? Eucgr.C00651 Secondary Identifier:  ? PAC:32039675
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C00651 0.5kb upstream 0.5kb upstream 2244 true Chr03: 11894571-11896814 Eucalyptus grandis
Eucgr.C00651 0.5kb upstream 0.5kb upstream 500 false Chr03: 11894571-11895070 Eucalyptus grandis
Eucgr.C00651 0.5kb downstream 0.5kb downstream 2244 true Chr03: 11895071-11897314 Eucalyptus grandis
Eucgr.C00651 0.5kb downstream 0.5kb downstream 500 false Chr03: 11896815-11897314 Eucalyptus grandis
Eucgr.C00651 1.0kb upstream 1.0kb upstream 2744 true Chr03: 11894071-11896814 Eucalyptus grandis
Eucgr.C00651 1.0kb upstream 1.0kb upstream 1000 false Chr03: 11894071-11895070 Eucalyptus grandis
Eucgr.C00651 1.0kb downstream 1.0kb downstream 2744 true Chr03: 11895071-11897814 Eucalyptus grandis
Eucgr.C00651 1.0kb downstream 1.0kb downstream 1000 false Chr03: 11896815-11897814 Eucalyptus grandis
Eucgr.C00651 2.0kb upstream 2.0kb upstream 3744 true Chr03: 11893071-11896814 Eucalyptus grandis
Eucgr.C00651 2.0kb upstream 2.0kb upstream 2000 false Chr03: 11893071-11895070 Eucalyptus grandis
Eucgr.C00651 2.0kb downstream 2.0kb downstream 3744 true Chr03: 11895071-11898814 Eucalyptus grandis
Eucgr.C00651 2.0kb downstream 2.0kb downstream 2000 false Chr03: 11896815-11898814 Eucalyptus grandis
Eucgr.C00651 5.0kb upstream 5.0kb upstream 6744 true Chr03: 11890071-11896814 Eucalyptus grandis
Eucgr.C00651 5.0kb upstream 5.0kb upstream 5000 false Chr03: 11890071-11895070 Eucalyptus grandis
Eucgr.C00651 5.0kb downstream 5.0kb downstream 6744 true Chr03: 11895071-11901814 Eucalyptus grandis
Eucgr.C00651 5.0kb downstream 5.0kb downstream 5000 false Chr03: 11896815-11901814 Eucalyptus grandis
Eucgr.C00651 10.0kb upstream 10.0kb upstream 11744 true Chr03: 11885071-11896814 Eucalyptus grandis
Eucgr.C00651 10.0kb upstream 10.0kb upstream 10000 false Chr03: 11885071-11895070 Eucalyptus grandis
Eucgr.C00651 10.0kb downstream 10.0kb downstream 11744 true Chr03: 11895071-11906814 Eucalyptus grandis
Eucgr.C00651 10.0kb downstream 10.0kb downstream 10000 false Chr03: 11896815-11906814 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124071784 5270 Rosid View MSA
123749105 5271 Pentapetalae View MSA
122787298 5272 Eudicot View MSA
122041618 5273 Angiosperm View MSA
121309871 5274 Embryophyte View MSA
123347511 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.3965 0.0 71.4347 High  
cufflinks 12.9241 0.0 31.9184    
cufflinks 24.9552 0.0 62.1707    
cufflinks 4.26361 0.0 10.8838   Low
cufflinks 14.6891 0.0 33.9101    
cufflinks 27.1679 0.0 69.4489    

0 Strain