Gene : Eucgr.C01271 E. grandis v2.0
Defline:  (1 of 1) PTHR22849//PTHR22849:SF13 - WDSAM1 PROTEIN Genomic Order:  861
Name:  ? Eucgr.C01271 Secondary Identifier:  ? PAC:32038095
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-7511 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C01271 0.5kb upstream 0.5kb upstream 8434 true Chr03: 16730186-16738619 Eucalyptus grandis
Eucgr.C01271 0.5kb upstream 0.5kb upstream 500 false Chr03: 16730186-16730685 Eucalyptus grandis
Eucgr.C01271 0.5kb downstream 0.5kb downstream 8434 true Chr03: 16730686-16739119 Eucalyptus grandis
Eucgr.C01271 0.5kb downstream 0.5kb downstream 500 false Chr03: 16738620-16739119 Eucalyptus grandis
Eucgr.C01271 1.0kb upstream 1.0kb upstream 8934 true Chr03: 16729686-16738619 Eucalyptus grandis
Eucgr.C01271 1.0kb upstream 1.0kb upstream 1000 false Chr03: 16729686-16730685 Eucalyptus grandis
Eucgr.C01271 1.0kb downstream 1.0kb downstream 8934 true Chr03: 16730686-16739619 Eucalyptus grandis
Eucgr.C01271 1.0kb downstream 1.0kb downstream 1000 false Chr03: 16738620-16739619 Eucalyptus grandis
Eucgr.C01271 2.0kb upstream 2.0kb upstream 9934 true Chr03: 16728686-16738619 Eucalyptus grandis
Eucgr.C01271 2.0kb upstream 2.0kb upstream 2000 false Chr03: 16728686-16730685 Eucalyptus grandis
Eucgr.C01271 2.0kb downstream 2.0kb downstream 9934 true Chr03: 16730686-16740619 Eucalyptus grandis
Eucgr.C01271 2.0kb downstream 2.0kb downstream 2000 false Chr03: 16738620-16740619 Eucalyptus grandis
Eucgr.C01271 5.0kb upstream 5.0kb upstream 12934 true Chr03: 16725686-16738619 Eucalyptus grandis
Eucgr.C01271 5.0kb upstream 5.0kb upstream 5000 false Chr03: 16725686-16730685 Eucalyptus grandis
Eucgr.C01271 5.0kb downstream 5.0kb downstream 12934 true Chr03: 16730686-16743619 Eucalyptus grandis
Eucgr.C01271 5.0kb downstream 5.0kb downstream 5000 false Chr03: 16738620-16743619 Eucalyptus grandis
Eucgr.C01271 10.0kb upstream 10.0kb upstream 17934 true Chr03: 16720686-16738619 Eucalyptus grandis
Eucgr.C01271 10.0kb upstream 10.0kb upstream 10000 false Chr03: 16720686-16730685 Eucalyptus grandis
Eucgr.C01271 10.0kb downstream 10.0kb downstream 17934 true Chr03: 16730686-16748619 Eucalyptus grandis
Eucgr.C01271 10.0kb downstream 10.0kb downstream 10000 false Chr03: 16738620-16748619 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124070413 5270 Rosid View MSA
123749740 5271 Pentapetalae View MSA
122795160 5272 Eudicot View MSA
122049229 5273 Angiosperm View MSA
121348338 5274 Embryophyte View MSA
123380824 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.4844 0.0 5.9219    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.957489 0.0 2.66355    
cufflinks 0.276449 0.0 0.936302 Low Low
cufflinks 0.304999 0.0 1.03362 Low  
cufflinks 3.9363 0.0 9.61624   High

0 Strain