Gene : Eucgr.C01238 E. grandis v2.0
Defline:  (1 of 1) PTHR12169:SF6 - LACTATION ELEVATED PROTEIN 1 Genomic Order:  1968
Name:  ? Eucgr.C01238 Secondary Identifier:  ? PAC:32037843
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis ANAEROFRUCAT-PWY Eucalyptus grandis pathologic  
Egrandis ANAGLYCOLYSIS-PWY Eucalyptus grandis pathologic  
Egrandis GLUCOSE1PMETAB-PWY Eucalyptus grandis pathologic  
Egrandis PWY-621 Eucalyptus grandis pathologic  
Egrandis PWY-7238 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C01238 0.5kb upstream 0.5kb upstream 7127 true Chr03: 48548344-48555470 Eucalyptus grandis
Eucgr.C01238 0.5kb upstream 0.5kb upstream 500 false Chr03: 48554971-48555470 Eucalyptus grandis
Eucgr.C01238 0.5kb downstream 0.5kb downstream 7127 true Chr03: 48547844-48554970 Eucalyptus grandis
Eucgr.C01238 0.5kb downstream 0.5kb downstream 500 false Chr03: 48547844-48548343 Eucalyptus grandis
Eucgr.C01238 1.0kb upstream 1.0kb upstream 7627 true Chr03: 48548344-48555970 Eucalyptus grandis
Eucgr.C01238 1.0kb upstream 1.0kb upstream 1000 false Chr03: 48554971-48555970 Eucalyptus grandis
Eucgr.C01238 1.0kb downstream 1.0kb downstream 7627 true Chr03: 48547344-48554970 Eucalyptus grandis
Eucgr.C01238 1.0kb downstream 1.0kb downstream 1000 false Chr03: 48547344-48548343 Eucalyptus grandis
Eucgr.C01238 2.0kb upstream 2.0kb upstream 8627 true Chr03: 48548344-48556970 Eucalyptus grandis
Eucgr.C01238 2.0kb upstream 2.0kb upstream 2000 false Chr03: 48554971-48556970 Eucalyptus grandis
Eucgr.C01238 2.0kb downstream 2.0kb downstream 8627 true Chr03: 48546344-48554970 Eucalyptus grandis
Eucgr.C01238 2.0kb downstream 2.0kb downstream 2000 false Chr03: 48546344-48548343 Eucalyptus grandis
Eucgr.C01238 5.0kb upstream 5.0kb upstream 11627 true Chr03: 48548344-48559970 Eucalyptus grandis
Eucgr.C01238 5.0kb upstream 5.0kb upstream 5000 false Chr03: 48554971-48559970 Eucalyptus grandis
Eucgr.C01238 5.0kb downstream 5.0kb downstream 11627 true Chr03: 48543344-48554970 Eucalyptus grandis
Eucgr.C01238 5.0kb downstream 5.0kb downstream 5000 false Chr03: 48543344-48548343 Eucalyptus grandis
Eucgr.C01238 10.0kb upstream 10.0kb upstream 16627 true Chr03: 48548344-48564970 Eucalyptus grandis
Eucgr.C01238 10.0kb upstream 10.0kb upstream 10000 false Chr03: 48554971-48564970 Eucalyptus grandis
Eucgr.C01238 10.0kb downstream 10.0kb downstream 16627 true Chr03: 48538344-48554970 Eucalyptus grandis
Eucgr.C01238 10.0kb downstream 10.0kb downstream 10000 false Chr03: 48538344-48548343 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124061792 5270 Rosid View MSA
123752091 5271 Pentapetalae View MSA
122793026 5272 Eudicot View MSA
122047660 5273 Angiosperm View MSA
121344773 5274 Embryophyte View MSA
123427307 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.2254 0.0 49.8466   High
cufflinks 4.62535 0.0 11.2118   Low
cufflinks 24.3052 0.0 67.4928   High
cufflinks 5.86633 0.0 13.7932    
cufflinks 6.02793 0.0 17.4915    
cufflinks 15.5496 0.0 35.1604    

0 Strain