Gene : Eucgr.C01140 E. grandis v2.0
Defline:  (1 of 2) PTHR22603:SF24 - PROTEIN CKA-1, ISOFORM A Genomic Order:  969
Name:  ? Eucgr.C01140 Secondary Identifier:  ? PAC:32038020
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-3385 Eucalyptus grandis pathologic  
Egrandis PWY4FS-6 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C01140 0.5kb upstream 0.5kb upstream 5601 true Chr03: 18275230-18280830 Eucalyptus grandis
Eucgr.C01140 0.5kb upstream 0.5kb upstream 500 false Chr03: 18280331-18280830 Eucalyptus grandis
Eucgr.C01140 0.5kb downstream 0.5kb downstream 5601 true Chr03: 18274730-18280330 Eucalyptus grandis
Eucgr.C01140 0.5kb downstream 0.5kb downstream 500 false Chr03: 18274730-18275229 Eucalyptus grandis
Eucgr.C01140 1.0kb upstream 1.0kb upstream 6101 true Chr03: 18275230-18281330 Eucalyptus grandis
Eucgr.C01140 1.0kb upstream 1.0kb upstream 1000 false Chr03: 18280331-18281330 Eucalyptus grandis
Eucgr.C01140 1.0kb downstream 1.0kb downstream 6101 true Chr03: 18274230-18280330 Eucalyptus grandis
Eucgr.C01140 1.0kb downstream 1.0kb downstream 1000 false Chr03: 18274230-18275229 Eucalyptus grandis
Eucgr.C01140 2.0kb upstream 2.0kb upstream 7101 true Chr03: 18275230-18282330 Eucalyptus grandis
Eucgr.C01140 2.0kb upstream 2.0kb upstream 2000 false Chr03: 18280331-18282330 Eucalyptus grandis
Eucgr.C01140 2.0kb downstream 2.0kb downstream 7101 true Chr03: 18273230-18280330 Eucalyptus grandis
Eucgr.C01140 2.0kb downstream 2.0kb downstream 2000 false Chr03: 18273230-18275229 Eucalyptus grandis
Eucgr.C01140 5.0kb upstream 5.0kb upstream 10101 true Chr03: 18275230-18285330 Eucalyptus grandis
Eucgr.C01140 5.0kb upstream 5.0kb upstream 5000 false Chr03: 18280331-18285330 Eucalyptus grandis
Eucgr.C01140 5.0kb downstream 5.0kb downstream 10101 true Chr03: 18270230-18280330 Eucalyptus grandis
Eucgr.C01140 5.0kb downstream 5.0kb downstream 5000 false Chr03: 18270230-18275229 Eucalyptus grandis
Eucgr.C01140 10.0kb upstream 10.0kb upstream 15101 true Chr03: 18275230-18290330 Eucalyptus grandis
Eucgr.C01140 10.0kb upstream 10.0kb upstream 10000 false Chr03: 18280331-18290330 Eucalyptus grandis
Eucgr.C01140 10.0kb downstream 10.0kb downstream 15101 true Chr03: 18265230-18280330 Eucalyptus grandis
Eucgr.C01140 10.0kb downstream 10.0kb downstream 10000 false Chr03: 18265230-18275229 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124069180 5270 Rosid View MSA
123746925 5271 Pentapetalae View MSA
122797485 5272 Eudicot View MSA
122047896 5273 Angiosperm View MSA
121347088 5274 Embryophyte View MSA
123426626 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.7073 0.0 52.5068    
cufflinks 11.438 0.0 30.8913    
cufflinks 16.9078 0.0 48.1737    
cufflinks 17.7178 0.0 49.4783    
cufflinks 7.94421 0.0 21.1502   Low
cufflinks 15.01 0.0 35.4631    

0 Strain