Gene : Eucgr.C01788 E. grandis v2.0
Defline:  (1 of 3) PF01535//PF12854//PF14432 - PPR repeat (PPR) // PPR repeat (PPR_1) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  1329
Name:  ? Eucgr.C01788 Secondary Identifier:  ? PAC:32035972
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C01788 0.5kb upstream 0.5kb upstream 3294 true Chr03: 28743350-28746643 Eucalyptus grandis
Eucgr.C01788 0.5kb upstream 0.5kb upstream 500 false Chr03: 28746144-28746643 Eucalyptus grandis
Eucgr.C01788 0.5kb downstream 0.5kb downstream 3294 true Chr03: 28742850-28746143 Eucalyptus grandis
Eucgr.C01788 0.5kb downstream 0.5kb downstream 500 false Chr03: 28742850-28743349 Eucalyptus grandis
Eucgr.C01788 1.0kb upstream 1.0kb upstream 3794 true Chr03: 28743350-28747143 Eucalyptus grandis
Eucgr.C01788 1.0kb upstream 1.0kb upstream 1000 false Chr03: 28746144-28747143 Eucalyptus grandis
Eucgr.C01788 1.0kb downstream 1.0kb downstream 3794 true Chr03: 28742350-28746143 Eucalyptus grandis
Eucgr.C01788 1.0kb downstream 1.0kb downstream 1000 false Chr03: 28742350-28743349 Eucalyptus grandis
Eucgr.C01788 2.0kb upstream 2.0kb upstream 4794 true Chr03: 28743350-28748143 Eucalyptus grandis
Eucgr.C01788 2.0kb upstream 2.0kb upstream 2000 false Chr03: 28746144-28748143 Eucalyptus grandis
Eucgr.C01788 2.0kb downstream 2.0kb downstream 4794 true Chr03: 28741350-28746143 Eucalyptus grandis
Eucgr.C01788 2.0kb downstream 2.0kb downstream 2000 false Chr03: 28741350-28743349 Eucalyptus grandis
Eucgr.C01788 5.0kb upstream 5.0kb upstream 7794 true Chr03: 28743350-28751143 Eucalyptus grandis
Eucgr.C01788 5.0kb upstream 5.0kb upstream 5000 false Chr03: 28746144-28751143 Eucalyptus grandis
Eucgr.C01788 5.0kb downstream 5.0kb downstream 7794 true Chr03: 28738350-28746143 Eucalyptus grandis
Eucgr.C01788 5.0kb downstream 5.0kb downstream 5000 false Chr03: 28738350-28743349 Eucalyptus grandis
Eucgr.C01788 10.0kb upstream 10.0kb upstream 12794 true Chr03: 28743350-28756143 Eucalyptus grandis
Eucgr.C01788 10.0kb upstream 10.0kb upstream 10000 false Chr03: 28746144-28756143 Eucalyptus grandis
Eucgr.C01788 10.0kb downstream 10.0kb downstream 12794 true Chr03: 28733350-28746143 Eucalyptus grandis
Eucgr.C01788 10.0kb downstream 10.0kb downstream 10000 false Chr03: 28733350-28743349 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066388 5270 Rosid View MSA
123750280 5271 Pentapetalae View MSA
122796437 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.71527 0.0 6.67106    
cufflinks 1.47789 0.0 3.84759   Low
cufflinks 2.72743 0.0 6.67075    
cufflinks 3.1844 0.0 7.64334    
cufflinks 2.17375 0.0 5.44452    
cufflinks 4.04516 0.0 9.58084   High

0 Strain