Gene : Eucgr.C01789 E. grandis v2.0
Defline:  (1 of 2) KOG0919 - C-5 cytosine-specific DNA methylase Genomic Order:  1328
Name:  ? Eucgr.C01789 Secondary Identifier:  ? PAC:32039084
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C01789 0.5kb upstream 0.5kb upstream 6288 true Chr03: 28734758-28741045 Eucalyptus grandis
Eucgr.C01789 0.5kb upstream 0.5kb upstream 500 false Chr03: 28740546-28741045 Eucalyptus grandis
Eucgr.C01789 0.5kb downstream 0.5kb downstream 6288 true Chr03: 28734258-28740545 Eucalyptus grandis
Eucgr.C01789 0.5kb downstream 0.5kb downstream 500 false Chr03: 28734258-28734757 Eucalyptus grandis
Eucgr.C01789 1.0kb upstream 1.0kb upstream 6788 true Chr03: 28734758-28741545 Eucalyptus grandis
Eucgr.C01789 1.0kb upstream 1.0kb upstream 1000 false Chr03: 28740546-28741545 Eucalyptus grandis
Eucgr.C01789 1.0kb downstream 1.0kb downstream 6788 true Chr03: 28733758-28740545 Eucalyptus grandis
Eucgr.C01789 1.0kb downstream 1.0kb downstream 1000 false Chr03: 28733758-28734757 Eucalyptus grandis
Eucgr.C01789 2.0kb upstream 2.0kb upstream 7788 true Chr03: 28734758-28742545 Eucalyptus grandis
Eucgr.C01789 2.0kb upstream 2.0kb upstream 2000 false Chr03: 28740546-28742545 Eucalyptus grandis
Eucgr.C01789 2.0kb downstream 2.0kb downstream 7788 true Chr03: 28732758-28740545 Eucalyptus grandis
Eucgr.C01789 2.0kb downstream 2.0kb downstream 2000 false Chr03: 28732758-28734757 Eucalyptus grandis
Eucgr.C01789 5.0kb upstream 5.0kb upstream 10788 true Chr03: 28734758-28745545 Eucalyptus grandis
Eucgr.C01789 5.0kb upstream 5.0kb upstream 5000 false Chr03: 28740546-28745545 Eucalyptus grandis
Eucgr.C01789 5.0kb downstream 5.0kb downstream 10788 true Chr03: 28729758-28740545 Eucalyptus grandis
Eucgr.C01789 5.0kb downstream 5.0kb downstream 5000 false Chr03: 28729758-28734757 Eucalyptus grandis
Eucgr.C01789 10.0kb upstream 10.0kb upstream 15788 true Chr03: 28734758-28750545 Eucalyptus grandis
Eucgr.C01789 10.0kb upstream 10.0kb upstream 10000 false Chr03: 28740546-28750545 Eucalyptus grandis
Eucgr.C01789 10.0kb downstream 10.0kb downstream 15788 true Chr03: 28724758-28740545 Eucalyptus grandis
Eucgr.C01789 10.0kb downstream 10.0kb downstream 10000 false Chr03: 28724758-28734757 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124060952 5270 Rosid View MSA
123740038 5271 Pentapetalae View MSA
122790174 5272 Eudicot View MSA
122042989 5273 Angiosperm View MSA
121345070 5274 Embryophyte View MSA
123423972 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.16442 0.0 18.7972   High
cufflinks 3.68858 0.0 9.53175    
cufflinks 4.79458 0.0 11.9656    
cufflinks 3.10111 0.0 8.21363    
cufflinks 2.64245 0.0 7.32097   Low
cufflinks 6.44469 0.0 18.9168   High

0 Strain