Gene : Eucgr.C01769 E. grandis v2.0
Defline:  (1 of 6) PTHR13301:SF33 - CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 1 [UDP-FORMING] Genomic Order:  1348
Name:  ? Eucgr.C01769 Secondary Identifier:  ? PAC:32039449
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-1001 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C01769 0.5kb upstream 0.5kb upstream 9858 true Chr03: 29256456-29266313 Eucalyptus grandis
Eucgr.C01769 0.5kb upstream 0.5kb upstream 500 false Chr03: 29256456-29256955 Eucalyptus grandis
Eucgr.C01769 0.5kb downstream 0.5kb downstream 9858 true Chr03: 29256956-29266813 Eucalyptus grandis
Eucgr.C01769 0.5kb downstream 0.5kb downstream 500 false Chr03: 29266314-29266813 Eucalyptus grandis
Eucgr.C01769 1.0kb upstream 1.0kb upstream 10358 true Chr03: 29255956-29266313 Eucalyptus grandis
Eucgr.C01769 1.0kb upstream 1.0kb upstream 1000 false Chr03: 29255956-29256955 Eucalyptus grandis
Eucgr.C01769 1.0kb downstream 1.0kb downstream 10358 true Chr03: 29256956-29267313 Eucalyptus grandis
Eucgr.C01769 1.0kb downstream 1.0kb downstream 1000 false Chr03: 29266314-29267313 Eucalyptus grandis
Eucgr.C01769 2.0kb upstream 2.0kb upstream 11358 true Chr03: 29254956-29266313 Eucalyptus grandis
Eucgr.C01769 2.0kb upstream 2.0kb upstream 2000 false Chr03: 29254956-29256955 Eucalyptus grandis
Eucgr.C01769 2.0kb downstream 2.0kb downstream 11358 true Chr03: 29256956-29268313 Eucalyptus grandis
Eucgr.C01769 2.0kb downstream 2.0kb downstream 2000 false Chr03: 29266314-29268313 Eucalyptus grandis
Eucgr.C01769 5.0kb upstream 5.0kb upstream 14358 true Chr03: 29251956-29266313 Eucalyptus grandis
Eucgr.C01769 5.0kb upstream 5.0kb upstream 5000 false Chr03: 29251956-29256955 Eucalyptus grandis
Eucgr.C01769 5.0kb downstream 5.0kb downstream 14358 true Chr03: 29256956-29271313 Eucalyptus grandis
Eucgr.C01769 5.0kb downstream 5.0kb downstream 5000 false Chr03: 29266314-29271313 Eucalyptus grandis
Eucgr.C01769 10.0kb upstream 10.0kb upstream 19358 true Chr03: 29246956-29266313 Eucalyptus grandis
Eucgr.C01769 10.0kb upstream 10.0kb upstream 10000 false Chr03: 29246956-29256955 Eucalyptus grandis
Eucgr.C01769 10.0kb downstream 10.0kb downstream 19358 true Chr03: 29256956-29276313 Eucalyptus grandis
Eucgr.C01769 10.0kb downstream 10.0kb downstream 10000 false Chr03: 29266314-29276313 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068602 5270 Rosid View MSA
123746424 5271 Pentapetalae View MSA
122793475 5272 Eudicot View MSA
122046929 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.6296 0.0 21.3403   Low
cufflinks 33.1078 0.0 75.6071   High
cufflinks 12.1869 0.0 26.9505    
cufflinks 21.6866 0.0 48.5224    
cufflinks 21.2985 0.0 47.5732    
cufflinks 20.3135 0.0 45.2224    

0 Strain