Gene : Eucgr.C02509 E. grandis v2.0
Defline:  (1 of 1) KOG4495 - RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B Genomic Order:  2015
Name:  ? Eucgr.C02509 Secondary Identifier:  ? PAC:32036564
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C02509 0.5kb upstream 0.5kb upstream 6363 true Chr03: 49599308-49605670 Eucalyptus grandis
Eucgr.C02509 0.5kb upstream 0.5kb upstream 500 false Chr03: 49599308-49599807 Eucalyptus grandis
Eucgr.C02509 0.5kb downstream 0.5kb downstream 6363 true Chr03: 49599808-49606170 Eucalyptus grandis
Eucgr.C02509 0.5kb downstream 0.5kb downstream 500 false Chr03: 49605671-49606170 Eucalyptus grandis
Eucgr.C02509 1.0kb upstream 1.0kb upstream 6863 true Chr03: 49598808-49605670 Eucalyptus grandis
Eucgr.C02509 1.0kb upstream 1.0kb upstream 1000 false Chr03: 49598808-49599807 Eucalyptus grandis
Eucgr.C02509 1.0kb downstream 1.0kb downstream 6863 true Chr03: 49599808-49606670 Eucalyptus grandis
Eucgr.C02509 1.0kb downstream 1.0kb downstream 1000 false Chr03: 49605671-49606670 Eucalyptus grandis
Eucgr.C02509 2.0kb upstream 2.0kb upstream 7863 true Chr03: 49597808-49605670 Eucalyptus grandis
Eucgr.C02509 2.0kb upstream 2.0kb upstream 2000 false Chr03: 49597808-49599807 Eucalyptus grandis
Eucgr.C02509 2.0kb downstream 2.0kb downstream 7863 true Chr03: 49599808-49607670 Eucalyptus grandis
Eucgr.C02509 2.0kb downstream 2.0kb downstream 2000 false Chr03: 49605671-49607670 Eucalyptus grandis
Eucgr.C02509 5.0kb upstream 5.0kb upstream 10863 true Chr03: 49594808-49605670 Eucalyptus grandis
Eucgr.C02509 5.0kb upstream 5.0kb upstream 5000 false Chr03: 49594808-49599807 Eucalyptus grandis
Eucgr.C02509 5.0kb downstream 5.0kb downstream 10863 true Chr03: 49599808-49610670 Eucalyptus grandis
Eucgr.C02509 5.0kb downstream 5.0kb downstream 5000 false Chr03: 49605671-49610670 Eucalyptus grandis
Eucgr.C02509 10.0kb upstream 10.0kb upstream 15863 true Chr03: 49589808-49605670 Eucalyptus grandis
Eucgr.C02509 10.0kb upstream 10.0kb upstream 10000 false Chr03: 49589808-49599807 Eucalyptus grandis
Eucgr.C02509 10.0kb downstream 10.0kb downstream 15863 true Chr03: 49599808-49615670 Eucalyptus grandis
Eucgr.C02509 10.0kb downstream 10.0kb downstream 10000 false Chr03: 49605671-49615670 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041259 5273 Angiosperm View MSA
124044213 5270 Rosid Singleton cluster - no MSA
123745453 5271 Pentapetalae View MSA
122793861 5272 Eudicot View MSA
121350685 5274 Embryophyte View MSA
123425021 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 35.7776 0.0 90.033 High  
cufflinks 48.239 0.0 127.956 High  
cufflinks 39.6828 0.0 99.0344 High  
cufflinks 62.1519 0.0 152.699 High  
cufflinks 86.8235 0.0 215.717 High High
cufflinks 26.6329 0.0 69.9136   Low

0 Strain