Gene : Eucgr.C02259 E. grandis v2.0
Defline:  (1 of 33) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  1786
Name:  ? Eucgr.C02259 Secondary Identifier:  ? PAC:32038048
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C02259 0.5kb upstream 0.5kb upstream 4601 true Chr03: 42786029-42790629 Eucalyptus grandis
Eucgr.C02259 0.5kb upstream 0.5kb upstream 500 false Chr03: 42790130-42790629 Eucalyptus grandis
Eucgr.C02259 0.5kb downstream 0.5kb downstream 4601 true Chr03: 42785529-42790129 Eucalyptus grandis
Eucgr.C02259 0.5kb downstream 0.5kb downstream 500 false Chr03: 42785529-42786028 Eucalyptus grandis
Eucgr.C02259 1.0kb upstream 1.0kb upstream 5101 true Chr03: 42786029-42791129 Eucalyptus grandis
Eucgr.C02259 1.0kb upstream 1.0kb upstream 1000 false Chr03: 42790130-42791129 Eucalyptus grandis
Eucgr.C02259 1.0kb downstream 1.0kb downstream 5101 true Chr03: 42785029-42790129 Eucalyptus grandis
Eucgr.C02259 1.0kb downstream 1.0kb downstream 1000 false Chr03: 42785029-42786028 Eucalyptus grandis
Eucgr.C02259 2.0kb upstream 2.0kb upstream 6101 true Chr03: 42786029-42792129 Eucalyptus grandis
Eucgr.C02259 2.0kb upstream 2.0kb upstream 2000 false Chr03: 42790130-42792129 Eucalyptus grandis
Eucgr.C02259 2.0kb downstream 2.0kb downstream 6101 true Chr03: 42784029-42790129 Eucalyptus grandis
Eucgr.C02259 2.0kb downstream 2.0kb downstream 2000 false Chr03: 42784029-42786028 Eucalyptus grandis
Eucgr.C02259 5.0kb upstream 5.0kb upstream 9101 true Chr03: 42786029-42795129 Eucalyptus grandis
Eucgr.C02259 5.0kb upstream 5.0kb upstream 5000 false Chr03: 42790130-42795129 Eucalyptus grandis
Eucgr.C02259 5.0kb downstream 5.0kb downstream 9101 true Chr03: 42781029-42790129 Eucalyptus grandis
Eucgr.C02259 5.0kb downstream 5.0kb downstream 5000 false Chr03: 42781029-42786028 Eucalyptus grandis
Eucgr.C02259 10.0kb upstream 10.0kb upstream 14101 true Chr03: 42786029-42800129 Eucalyptus grandis
Eucgr.C02259 10.0kb upstream 10.0kb upstream 10000 false Chr03: 42790130-42800129 Eucalyptus grandis
Eucgr.C02259 10.0kb downstream 10.0kb downstream 14101 true Chr03: 42776029-42790129 Eucalyptus grandis
Eucgr.C02259 10.0kb downstream 10.0kb downstream 10000 false Chr03: 42776029-42786028 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122032232 5273 Angiosperm View MSA
124070759 5270 Rosid View MSA
123743197 5271 Pentapetalae View MSA
122770561 5272 Eudicot View MSA
121301155 5274 Embryophyte View MSA
123338836 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.15237 0.0 3.1751   High
cufflinks 0.548419 0.0 1.62291 Low  
cufflinks 0.670689 0.0 1.94463    
cufflinks 1.12902 0.0 3.08094    
cufflinks 0.775507 0.0 2.21725    
cufflinks 0.307915 0.0 0.990275 Low Low

0 Strain