Gene : Eucgr.C02923 E. grandis v2.0
Defline:  (1 of 14) 1.13.11.51 - 9-cis-epoxycarotenoid dioxygenase / VP14 Genomic Order:  2383
Name:  ? Eucgr.C02923 Secondary Identifier:  ? PAC:32036468
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-695 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C02923 0.5kb upstream 0.5kb upstream 2960 true Chr03: 58789503-58792462 Eucalyptus grandis
Eucgr.C02923 0.5kb upstream 0.5kb upstream 500 false Chr03: 58791963-58792462 Eucalyptus grandis
Eucgr.C02923 0.5kb downstream 0.5kb downstream 2960 true Chr03: 58789003-58791962 Eucalyptus grandis
Eucgr.C02923 0.5kb downstream 0.5kb downstream 500 false Chr03: 58789003-58789502 Eucalyptus grandis
Eucgr.C02923 1.0kb upstream 1.0kb upstream 3460 true Chr03: 58789503-58792962 Eucalyptus grandis
Eucgr.C02923 1.0kb upstream 1.0kb upstream 1000 false Chr03: 58791963-58792962 Eucalyptus grandis
Eucgr.C02923 1.0kb downstream 1.0kb downstream 3460 true Chr03: 58788503-58791962 Eucalyptus grandis
Eucgr.C02923 1.0kb downstream 1.0kb downstream 1000 false Chr03: 58788503-58789502 Eucalyptus grandis
Eucgr.C02923 2.0kb upstream 2.0kb upstream 4460 true Chr03: 58789503-58793962 Eucalyptus grandis
Eucgr.C02923 2.0kb upstream 2.0kb upstream 2000 false Chr03: 58791963-58793962 Eucalyptus grandis
Eucgr.C02923 2.0kb downstream 2.0kb downstream 4460 true Chr03: 58787503-58791962 Eucalyptus grandis
Eucgr.C02923 2.0kb downstream 2.0kb downstream 2000 false Chr03: 58787503-58789502 Eucalyptus grandis
Eucgr.C02923 5.0kb upstream 5.0kb upstream 7460 true Chr03: 58789503-58796962 Eucalyptus grandis
Eucgr.C02923 5.0kb upstream 5.0kb upstream 5000 false Chr03: 58791963-58796962 Eucalyptus grandis
Eucgr.C02923 5.0kb downstream 5.0kb downstream 7460 true Chr03: 58784503-58791962 Eucalyptus grandis
Eucgr.C02923 5.0kb downstream 5.0kb downstream 5000 false Chr03: 58784503-58789502 Eucalyptus grandis
Eucgr.C02923 10.0kb upstream 10.0kb upstream 12460 true Chr03: 58789503-58801962 Eucalyptus grandis
Eucgr.C02923 10.0kb upstream 10.0kb upstream 10000 false Chr03: 58791963-58801962 Eucalyptus grandis
Eucgr.C02923 10.0kb downstream 10.0kb downstream 12460 true Chr03: 58779503-58791962 Eucalyptus grandis
Eucgr.C02923 10.0kb downstream 10.0kb downstream 10000 false Chr03: 58779503-58789502 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124052226 5270 Rosid View MSA
123748697 5271 Pentapetalae View MSA
122795171 5272 Eudicot View MSA
122051607 5273 Angiosperm View MSA
121349725 5274 Embryophyte View MSA
123381417 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.545747 0.0 1.69784   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0638049 0.0 0.28893 Low  
cufflinks 0.118244 0.0 0.445511 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain