Gene : Eucgr.C02875 E. grandis v2.0
Defline:  (1 of 13) PF01535//PF12854//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  2341
Name:  ? Eucgr.C02875 Secondary Identifier:  ? PAC:32036522
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C02875 0.5kb upstream 0.5kb upstream 3134 true Chr03: 58273490-58276623 Eucalyptus grandis
Eucgr.C02875 0.5kb upstream 0.5kb upstream 500 false Chr03: 58273490-58273989 Eucalyptus grandis
Eucgr.C02875 0.5kb downstream 0.5kb downstream 3134 true Chr03: 58273990-58277123 Eucalyptus grandis
Eucgr.C02875 0.5kb downstream 0.5kb downstream 500 false Chr03: 58276624-58277123 Eucalyptus grandis
Eucgr.C02875 1.0kb upstream 1.0kb upstream 3634 true Chr03: 58272990-58276623 Eucalyptus grandis
Eucgr.C02875 1.0kb upstream 1.0kb upstream 1000 false Chr03: 58272990-58273989 Eucalyptus grandis
Eucgr.C02875 1.0kb downstream 1.0kb downstream 3634 true Chr03: 58273990-58277623 Eucalyptus grandis
Eucgr.C02875 1.0kb downstream 1.0kb downstream 1000 false Chr03: 58276624-58277623 Eucalyptus grandis
Eucgr.C02875 2.0kb upstream 2.0kb upstream 4634 true Chr03: 58271990-58276623 Eucalyptus grandis
Eucgr.C02875 2.0kb upstream 2.0kb upstream 2000 false Chr03: 58271990-58273989 Eucalyptus grandis
Eucgr.C02875 2.0kb downstream 2.0kb downstream 4634 true Chr03: 58273990-58278623 Eucalyptus grandis
Eucgr.C02875 2.0kb downstream 2.0kb downstream 2000 false Chr03: 58276624-58278623 Eucalyptus grandis
Eucgr.C02875 5.0kb upstream 5.0kb upstream 7634 true Chr03: 58268990-58276623 Eucalyptus grandis
Eucgr.C02875 5.0kb upstream 5.0kb upstream 5000 false Chr03: 58268990-58273989 Eucalyptus grandis
Eucgr.C02875 5.0kb downstream 5.0kb downstream 7634 true Chr03: 58273990-58281623 Eucalyptus grandis
Eucgr.C02875 5.0kb downstream 5.0kb downstream 5000 false Chr03: 58276624-58281623 Eucalyptus grandis
Eucgr.C02875 10.0kb upstream 10.0kb upstream 12634 true Chr03: 58263990-58276623 Eucalyptus grandis
Eucgr.C02875 10.0kb upstream 10.0kb upstream 10000 false Chr03: 58263990-58273989 Eucalyptus grandis
Eucgr.C02875 10.0kb downstream 10.0kb downstream 12634 true Chr03: 58273990-58286623 Eucalyptus grandis
Eucgr.C02875 10.0kb downstream 10.0kb downstream 10000 false Chr03: 58276624-58286623 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124069931 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.96126 0.0 5.02836    
cufflinks 0.486993 0.0 1.44114 Low Low
cufflinks 0.776705 0.0 2.18443    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 2.66896 0.0 6.63344   High

0 Strain