Gene : Eucgr.C03659 E. grandis v2.0
Defline:  (1 of 3) PF01535//PF13812//PF14432 - PPR repeat (PPR) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  2955
Name:  ? Eucgr.C03659 Secondary Identifier:  ? PAC:32038930
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C03659 0.5kb upstream 0.5kb upstream 2114 true Chr03: 74965899-74968012 Eucalyptus grandis
Eucgr.C03659 0.5kb upstream 0.5kb upstream 500 false Chr03: 74965899-74966398 Eucalyptus grandis
Eucgr.C03659 0.5kb downstream 0.5kb downstream 2114 true Chr03: 74966399-74968512 Eucalyptus grandis
Eucgr.C03659 0.5kb downstream 0.5kb downstream 500 false Chr03: 74968013-74968512 Eucalyptus grandis
Eucgr.C03659 1.0kb upstream 1.0kb upstream 2614 true Chr03: 74965399-74968012 Eucalyptus grandis
Eucgr.C03659 1.0kb upstream 1.0kb upstream 1000 false Chr03: 74965399-74966398 Eucalyptus grandis
Eucgr.C03659 1.0kb downstream 1.0kb downstream 2614 true Chr03: 74966399-74969012 Eucalyptus grandis
Eucgr.C03659 1.0kb downstream 1.0kb downstream 1000 false Chr03: 74968013-74969012 Eucalyptus grandis
Eucgr.C03659 2.0kb upstream 2.0kb upstream 3614 true Chr03: 74964399-74968012 Eucalyptus grandis
Eucgr.C03659 2.0kb upstream 2.0kb upstream 2000 false Chr03: 74964399-74966398 Eucalyptus grandis
Eucgr.C03659 2.0kb downstream 2.0kb downstream 3614 true Chr03: 74966399-74970012 Eucalyptus grandis
Eucgr.C03659 2.0kb downstream 2.0kb downstream 2000 false Chr03: 74968013-74970012 Eucalyptus grandis
Eucgr.C03659 5.0kb upstream 5.0kb upstream 6614 true Chr03: 74961399-74968012 Eucalyptus grandis
Eucgr.C03659 5.0kb upstream 5.0kb upstream 5000 false Chr03: 74961399-74966398 Eucalyptus grandis
Eucgr.C03659 5.0kb downstream 5.0kb downstream 6614 true Chr03: 74966399-74973012 Eucalyptus grandis
Eucgr.C03659 5.0kb downstream 5.0kb downstream 5000 false Chr03: 74968013-74973012 Eucalyptus grandis
Eucgr.C03659 10.0kb upstream 10.0kb upstream 11614 true Chr03: 74956399-74968012 Eucalyptus grandis
Eucgr.C03659 10.0kb upstream 10.0kb upstream 10000 false Chr03: 74956399-74966398 Eucalyptus grandis
Eucgr.C03659 10.0kb downstream 10.0kb downstream 11614 true Chr03: 74966399-74978012 Eucalyptus grandis
Eucgr.C03659 10.0kb downstream 10.0kb downstream 10000 false Chr03: 74968013-74978012 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124072182 5270 Rosid View MSA
123750280 5271 Pentapetalae View MSA
122796437 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.15874 0.0 8.00609    
cufflinks 1.0823 0.0 3.06522    
cufflinks 1.31064 0.0 3.63369    
cufflinks 0.435266 0.0 1.36394   Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 6.08697 0.0 14.4168   High

0 Strain