Gene : Eucgr.C03415 E. grandis v2.0
Defline:  (1 of 1) PTHR13789:SF207 - LYCOPENE EPSILON CYCLASE, CHLOROPLASTIC Genomic Order:  2842
Name:  ? Eucgr.C03415 Secondary Identifier:  ? PAC:32039071
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis CAROTENOID-PWY Eucalyptus grandis pathologic  
Egrandis PWY-5175 Eucalyptus grandis pathologic  
Egrandis PWY-5946 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C03415 0.5kb upstream 0.5kb upstream 7983 true Chr03: 72100952-72108934 Eucalyptus grandis
Eucgr.C03415 0.5kb upstream 0.5kb upstream 500 false Chr03: 72108435-72108934 Eucalyptus grandis
Eucgr.C03415 0.5kb downstream 0.5kb downstream 7983 true Chr03: 72100452-72108434 Eucalyptus grandis
Eucgr.C03415 0.5kb downstream 0.5kb downstream 500 false Chr03: 72100452-72100951 Eucalyptus grandis
Eucgr.C03415 1.0kb upstream 1.0kb upstream 8483 true Chr03: 72100952-72109434 Eucalyptus grandis
Eucgr.C03415 1.0kb upstream 1.0kb upstream 1000 false Chr03: 72108435-72109434 Eucalyptus grandis
Eucgr.C03415 1.0kb downstream 1.0kb downstream 8483 true Chr03: 72099952-72108434 Eucalyptus grandis
Eucgr.C03415 1.0kb downstream 1.0kb downstream 1000 false Chr03: 72099952-72100951 Eucalyptus grandis
Eucgr.C03415 2.0kb upstream 2.0kb upstream 9483 true Chr03: 72100952-72110434 Eucalyptus grandis
Eucgr.C03415 2.0kb upstream 2.0kb upstream 2000 false Chr03: 72108435-72110434 Eucalyptus grandis
Eucgr.C03415 2.0kb downstream 2.0kb downstream 9483 true Chr03: 72098952-72108434 Eucalyptus grandis
Eucgr.C03415 2.0kb downstream 2.0kb downstream 2000 false Chr03: 72098952-72100951 Eucalyptus grandis
Eucgr.C03415 5.0kb upstream 5.0kb upstream 12483 true Chr03: 72100952-72113434 Eucalyptus grandis
Eucgr.C03415 5.0kb upstream 5.0kb upstream 5000 false Chr03: 72108435-72113434 Eucalyptus grandis
Eucgr.C03415 5.0kb downstream 5.0kb downstream 12483 true Chr03: 72095952-72108434 Eucalyptus grandis
Eucgr.C03415 5.0kb downstream 5.0kb downstream 5000 false Chr03: 72095952-72100951 Eucalyptus grandis
Eucgr.C03415 10.0kb upstream 10.0kb upstream 17483 true Chr03: 72100952-72118434 Eucalyptus grandis
Eucgr.C03415 10.0kb upstream 10.0kb upstream 10000 false Chr03: 72108435-72118434 Eucalyptus grandis
Eucgr.C03415 10.0kb downstream 10.0kb downstream 17483 true Chr03: 72090952-72108434 Eucalyptus grandis
Eucgr.C03415 10.0kb downstream 10.0kb downstream 10000 false Chr03: 72090952-72100951 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068333 5270 Rosid View MSA
123739919 5271 Pentapetalae View MSA
122791667 5272 Eudicot View MSA
122041543 5273 Angiosperm View MSA
121345455 5274 Embryophyte View MSA
123424108 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.54189 0.0 13.7112    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.94573 0.0 6.29258    
cufflinks 0.213992 0.0 0.83589 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 11.4886 0.0 31.2411    

0 Strain