Gene : Eucgr.C03174 E. grandis v2.0
Defline:  (1 of 1) PTHR23240//PTHR23240:SF10 - DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED Genomic Order:  2574
Name:  ? Eucgr.C03174 Secondary Identifier:  ? PAC:32037678
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C03174 0.5kb upstream 0.5kb upstream 6903 true Chr03: 64089652-64096554 Eucalyptus grandis
Eucgr.C03174 0.5kb upstream 0.5kb upstream 500 false Chr03: 64089652-64090151 Eucalyptus grandis
Eucgr.C03174 0.5kb downstream 0.5kb downstream 6903 true Chr03: 64090152-64097054 Eucalyptus grandis
Eucgr.C03174 0.5kb downstream 0.5kb downstream 500 false Chr03: 64096555-64097054 Eucalyptus grandis
Eucgr.C03174 1.0kb upstream 1.0kb upstream 7403 true Chr03: 64089152-64096554 Eucalyptus grandis
Eucgr.C03174 1.0kb upstream 1.0kb upstream 1000 false Chr03: 64089152-64090151 Eucalyptus grandis
Eucgr.C03174 1.0kb downstream 1.0kb downstream 7403 true Chr03: 64090152-64097554 Eucalyptus grandis
Eucgr.C03174 1.0kb downstream 1.0kb downstream 1000 false Chr03: 64096555-64097554 Eucalyptus grandis
Eucgr.C03174 2.0kb upstream 2.0kb upstream 8403 true Chr03: 64088152-64096554 Eucalyptus grandis
Eucgr.C03174 2.0kb upstream 2.0kb upstream 2000 false Chr03: 64088152-64090151 Eucalyptus grandis
Eucgr.C03174 2.0kb downstream 2.0kb downstream 8403 true Chr03: 64090152-64098554 Eucalyptus grandis
Eucgr.C03174 2.0kb downstream 2.0kb downstream 2000 false Chr03: 64096555-64098554 Eucalyptus grandis
Eucgr.C03174 5.0kb upstream 5.0kb upstream 11403 true Chr03: 64085152-64096554 Eucalyptus grandis
Eucgr.C03174 5.0kb upstream 5.0kb upstream 5000 false Chr03: 64085152-64090151 Eucalyptus grandis
Eucgr.C03174 5.0kb downstream 5.0kb downstream 11403 true Chr03: 64090152-64101554 Eucalyptus grandis
Eucgr.C03174 5.0kb downstream 5.0kb downstream 5000 false Chr03: 64096555-64101554 Eucalyptus grandis
Eucgr.C03174 10.0kb upstream 10.0kb upstream 16403 true Chr03: 64080152-64096554 Eucalyptus grandis
Eucgr.C03174 10.0kb upstream 10.0kb upstream 10000 false Chr03: 64080152-64090151 Eucalyptus grandis
Eucgr.C03174 10.0kb downstream 10.0kb downstream 16403 true Chr03: 64090152-64106554 Eucalyptus grandis
Eucgr.C03174 10.0kb downstream 10.0kb downstream 10000 false Chr03: 64096555-64106554 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066680 5270 Rosid View MSA
123739588 5271 Pentapetalae View MSA
122791348 5272 Eudicot View MSA
122046861 5273 Angiosperm View MSA
121351448 5274 Embryophyte View MSA
123426430 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.21486 0.0 3.23401   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.29462 0.0 3.41564   High
cufflinks 0.251115 0.0 0.78689 Low  
cufflinks 0.446456 0.0 1.31706 Low  
cufflinks 0.222922 0.0 0.716931 Low Low

0 Strain