Gene : Eucgr.C03179 E. grandis v2.0
Defline:  (1 of 1) PTHR22763:SF50 - E3 UBIQUITIN-PROTEIN LIGASE AIP2 Genomic Order:  2578
Name:  ? Eucgr.C03179 Secondary Identifier:  ? PAC:32036117
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-7511 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C03179 0.5kb upstream 0.5kb upstream 3571 true Chr03: 64154332-64157902 Eucalyptus grandis
Eucgr.C03179 0.5kb upstream 0.5kb upstream 500 false Chr03: 64157403-64157902 Eucalyptus grandis
Eucgr.C03179 0.5kb downstream 0.5kb downstream 3571 true Chr03: 64153832-64157402 Eucalyptus grandis
Eucgr.C03179 0.5kb downstream 0.5kb downstream 500 false Chr03: 64153832-64154331 Eucalyptus grandis
Eucgr.C03179 1.0kb upstream 1.0kb upstream 4071 true Chr03: 64154332-64158402 Eucalyptus grandis
Eucgr.C03179 1.0kb upstream 1.0kb upstream 1000 false Chr03: 64157403-64158402 Eucalyptus grandis
Eucgr.C03179 1.0kb downstream 1.0kb downstream 4071 true Chr03: 64153332-64157402 Eucalyptus grandis
Eucgr.C03179 1.0kb downstream 1.0kb downstream 1000 false Chr03: 64153332-64154331 Eucalyptus grandis
Eucgr.C03179 2.0kb upstream 2.0kb upstream 5071 true Chr03: 64154332-64159402 Eucalyptus grandis
Eucgr.C03179 2.0kb upstream 2.0kb upstream 2000 false Chr03: 64157403-64159402 Eucalyptus grandis
Eucgr.C03179 2.0kb downstream 2.0kb downstream 5071 true Chr03: 64152332-64157402 Eucalyptus grandis
Eucgr.C03179 2.0kb downstream 2.0kb downstream 2000 false Chr03: 64152332-64154331 Eucalyptus grandis
Eucgr.C03179 5.0kb upstream 5.0kb upstream 8071 true Chr03: 64154332-64162402 Eucalyptus grandis
Eucgr.C03179 5.0kb upstream 5.0kb upstream 5000 false Chr03: 64157403-64162402 Eucalyptus grandis
Eucgr.C03179 5.0kb downstream 5.0kb downstream 8071 true Chr03: 64149332-64157402 Eucalyptus grandis
Eucgr.C03179 5.0kb downstream 5.0kb downstream 5000 false Chr03: 64149332-64154331 Eucalyptus grandis
Eucgr.C03179 10.0kb upstream 10.0kb upstream 13071 true Chr03: 64154332-64167402 Eucalyptus grandis
Eucgr.C03179 10.0kb upstream 10.0kb upstream 10000 false Chr03: 64157403-64167402 Eucalyptus grandis
Eucgr.C03179 10.0kb downstream 10.0kb downstream 13071 true Chr03: 64144332-64157402 Eucalyptus grandis
Eucgr.C03179 10.0kb downstream 10.0kb downstream 10000 false Chr03: 64144332-64154331 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026169 5273 Angiosperm View MSA
124060743 5270 Rosid View MSA
123738156 5271 Pentapetalae View MSA
122787757 5272 Eudicot View MSA
123429130 5275 Viridiplantae View MSA
121350344 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.0478 0.0 66.4512 High  
cufflinks 24.8141 0.0 54.8914   Low
cufflinks 30.1556 0.0 66.6956 High  
cufflinks 31.2708 0.0 69.1924   High
cufflinks 24.8365 0.0 54.9487   Low
cufflinks 27.2726 0.0 60.3269    

0 Strain