Gene : Eucgr.D00245 E. grandis v2.0
Defline:  (1 of 1) PTHR11538:SF40 - PHENYLALANINE--TRNA LIGASE ALPHA SUBUNIT Genomic Order:  187
Name:  ? Eucgr.D00245 Secondary Identifier:  ? PAC:32050016
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis TRNA-CHARGING-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D00245 0.5kb upstream 0.5kb upstream 8903 true Chr04: 4162227-4171129 Eucalyptus grandis
Eucgr.D00245 0.5kb upstream 0.5kb upstream 500 false Chr04: 4162227-4162726 Eucalyptus grandis
Eucgr.D00245 0.5kb downstream 0.5kb downstream 8903 true Chr04: 4162727-4171629 Eucalyptus grandis
Eucgr.D00245 0.5kb downstream 0.5kb downstream 500 false Chr04: 4171130-4171629 Eucalyptus grandis
Eucgr.D00245 1.0kb upstream 1.0kb upstream 9403 true Chr04: 4161727-4171129 Eucalyptus grandis
Eucgr.D00245 1.0kb upstream 1.0kb upstream 1000 false Chr04: 4161727-4162726 Eucalyptus grandis
Eucgr.D00245 1.0kb downstream 1.0kb downstream 9403 true Chr04: 4162727-4172129 Eucalyptus grandis
Eucgr.D00245 1.0kb downstream 1.0kb downstream 1000 false Chr04: 4171130-4172129 Eucalyptus grandis
Eucgr.D00245 2.0kb upstream 2.0kb upstream 10403 true Chr04: 4160727-4171129 Eucalyptus grandis
Eucgr.D00245 2.0kb upstream 2.0kb upstream 2000 false Chr04: 4160727-4162726 Eucalyptus grandis
Eucgr.D00245 2.0kb downstream 2.0kb downstream 10403 true Chr04: 4162727-4173129 Eucalyptus grandis
Eucgr.D00245 2.0kb downstream 2.0kb downstream 2000 false Chr04: 4171130-4173129 Eucalyptus grandis
Eucgr.D00245 5.0kb upstream 5.0kb upstream 13403 true Chr04: 4157727-4171129 Eucalyptus grandis
Eucgr.D00245 5.0kb upstream 5.0kb upstream 5000 false Chr04: 4157727-4162726 Eucalyptus grandis
Eucgr.D00245 5.0kb downstream 5.0kb downstream 13403 true Chr04: 4162727-4176129 Eucalyptus grandis
Eucgr.D00245 5.0kb downstream 5.0kb downstream 5000 false Chr04: 4171130-4176129 Eucalyptus grandis
Eucgr.D00245 10.0kb upstream 10.0kb upstream 18403 true Chr04: 4152727-4171129 Eucalyptus grandis
Eucgr.D00245 10.0kb upstream 10.0kb upstream 10000 false Chr04: 4152727-4162726 Eucalyptus grandis
Eucgr.D00245 10.0kb downstream 10.0kb downstream 18403 true Chr04: 4162727-4181129 Eucalyptus grandis
Eucgr.D00245 10.0kb downstream 10.0kb downstream 10000 false Chr04: 4171130-4181129 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040985 5273 Angiosperm View MSA
124067851 5270 Rosid View MSA
123744864 5271 Pentapetalae View MSA
122791100 5272 Eudicot View MSA
121346168 5274 Embryophyte View MSA
123424573 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 40.5708 0.0 102.195 High High
cufflinks 26.1191 0.0 64.764    
cufflinks 38.0343 0.0 97.1717 High High
cufflinks 25.4016 0.0 63.6669    
cufflinks 26.4044 0.0 59.3576    
cufflinks 31.66 0.0 82.1838    

0 Strain