Gene : Eucgr.D00258 E. grandis v2.0
Defline:  (1 of 4) PF03807//PF14833 - NADP oxidoreductase coenzyme F420-dependent (F420_oxidored) // NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase (NAD_binding_11) Genomic Order:  196
Name:  ? Eucgr.D00258 Secondary Identifier:  ? PAC:32050690
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis VALDEG-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D00258 0.5kb upstream 0.5kb upstream 12489 true Chr04: 4288156-4300644 Eucalyptus grandis
Eucgr.D00258 0.5kb upstream 0.5kb upstream 500 false Chr04: 4300145-4300644 Eucalyptus grandis
Eucgr.D00258 0.5kb downstream 0.5kb downstream 12489 true Chr04: 4287656-4300144 Eucalyptus grandis
Eucgr.D00258 0.5kb downstream 0.5kb downstream 500 false Chr04: 4287656-4288155 Eucalyptus grandis
Eucgr.D00258 1.0kb upstream 1.0kb upstream 12989 true Chr04: 4288156-4301144 Eucalyptus grandis
Eucgr.D00258 1.0kb upstream 1.0kb upstream 1000 false Chr04: 4300145-4301144 Eucalyptus grandis
Eucgr.D00258 1.0kb downstream 1.0kb downstream 12989 true Chr04: 4287156-4300144 Eucalyptus grandis
Eucgr.D00258 1.0kb downstream 1.0kb downstream 1000 false Chr04: 4287156-4288155 Eucalyptus grandis
Eucgr.D00258 2.0kb upstream 2.0kb upstream 13989 true Chr04: 4288156-4302144 Eucalyptus grandis
Eucgr.D00258 2.0kb upstream 2.0kb upstream 2000 false Chr04: 4300145-4302144 Eucalyptus grandis
Eucgr.D00258 2.0kb downstream 2.0kb downstream 13989 true Chr04: 4286156-4300144 Eucalyptus grandis
Eucgr.D00258 2.0kb downstream 2.0kb downstream 2000 false Chr04: 4286156-4288155 Eucalyptus grandis
Eucgr.D00258 5.0kb upstream 5.0kb upstream 16989 true Chr04: 4288156-4305144 Eucalyptus grandis
Eucgr.D00258 5.0kb upstream 5.0kb upstream 5000 false Chr04: 4300145-4305144 Eucalyptus grandis
Eucgr.D00258 5.0kb downstream 5.0kb downstream 16989 true Chr04: 4283156-4300144 Eucalyptus grandis
Eucgr.D00258 5.0kb downstream 5.0kb downstream 5000 false Chr04: 4283156-4288155 Eucalyptus grandis
Eucgr.D00258 10.0kb upstream 10.0kb upstream 21989 true Chr04: 4288156-4310144 Eucalyptus grandis
Eucgr.D00258 10.0kb upstream 10.0kb upstream 10000 false Chr04: 4300145-4310144 Eucalyptus grandis
Eucgr.D00258 10.0kb downstream 10.0kb downstream 21989 true Chr04: 4278156-4300144 Eucalyptus grandis
Eucgr.D00258 10.0kb downstream 10.0kb downstream 10000 false Chr04: 4278156-4288155 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062564 5270 Rosid View MSA
123738883 5271 Pentapetalae View MSA
122787575 5272 Eudicot View MSA
122045971 5273 Angiosperm View MSA
121347535 5274 Embryophyte View MSA
123424560 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.47997 0.0 4.3146    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.93152 0.0 5.46096    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain