Gene : Eucgr.D00234 E. grandis v2.0
Defline:  (1 of 1) PTHR34195:SF2 - PHOTOSYSTEM I REACTION CENTER SUBUNIT PSAK, CHLOROPLASTIC Genomic Order:  178
Name:  ? Eucgr.D00234 Secondary Identifier:  ? PAC:32049807
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PHOTOALL-PWY Eucalyptus grandis pathologic  
Egrandis PWY-101 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D00234 0.5kb upstream 0.5kb upstream 1674 true Chr04: 4004844-4006517 Eucalyptus grandis
Eucgr.D00234 0.5kb upstream 0.5kb upstream 500 false Chr04: 4006018-4006517 Eucalyptus grandis
Eucgr.D00234 0.5kb downstream 0.5kb downstream 1674 true Chr04: 4004344-4006017 Eucalyptus grandis
Eucgr.D00234 0.5kb downstream 0.5kb downstream 500 false Chr04: 4004344-4004843 Eucalyptus grandis
Eucgr.D00234 1.0kb upstream 1.0kb upstream 2174 true Chr04: 4004844-4007017 Eucalyptus grandis
Eucgr.D00234 1.0kb upstream 1.0kb upstream 1000 false Chr04: 4006018-4007017 Eucalyptus grandis
Eucgr.D00234 1.0kb downstream 1.0kb downstream 2174 true Chr04: 4003844-4006017 Eucalyptus grandis
Eucgr.D00234 1.0kb downstream 1.0kb downstream 1000 false Chr04: 4003844-4004843 Eucalyptus grandis
Eucgr.D00234 2.0kb upstream 2.0kb upstream 3174 true Chr04: 4004844-4008017 Eucalyptus grandis
Eucgr.D00234 2.0kb upstream 2.0kb upstream 2000 false Chr04: 4006018-4008017 Eucalyptus grandis
Eucgr.D00234 2.0kb downstream 2.0kb downstream 3174 true Chr04: 4002844-4006017 Eucalyptus grandis
Eucgr.D00234 2.0kb downstream 2.0kb downstream 2000 false Chr04: 4002844-4004843 Eucalyptus grandis
Eucgr.D00234 5.0kb upstream 5.0kb upstream 6174 true Chr04: 4004844-4011017 Eucalyptus grandis
Eucgr.D00234 5.0kb upstream 5.0kb upstream 5000 false Chr04: 4006018-4011017 Eucalyptus grandis
Eucgr.D00234 5.0kb downstream 5.0kb downstream 6174 true Chr04: 3999844-4006017 Eucalyptus grandis
Eucgr.D00234 5.0kb downstream 5.0kb downstream 5000 false Chr04: 3999844-4004843 Eucalyptus grandis
Eucgr.D00234 10.0kb upstream 10.0kb upstream 11174 true Chr04: 4004844-4016017 Eucalyptus grandis
Eucgr.D00234 10.0kb upstream 10.0kb upstream 10000 false Chr04: 4006018-4016017 Eucalyptus grandis
Eucgr.D00234 10.0kb downstream 10.0kb downstream 11174 true Chr04: 3994844-4006017 Eucalyptus grandis
Eucgr.D00234 10.0kb downstream 10.0kb downstream 10000 false Chr04: 3994844-4004843 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124064022 5270 Rosid View MSA
123739111 5271 Pentapetalae View MSA
122786435 5272 Eudicot View MSA
122044551 5273 Angiosperm View MSA
121347312 5274 Embryophyte View MSA
123425033 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 146.222 0.0 387.193 High  
cufflinks 8.75017 0.0 24.533    
cufflinks 45.8597 0.0 130.751 High  
cufflinks 0.922314 0.0 3.8978   Low
cufflinks 2.91307 0.0 9.87394    
cufflinks 281.466 0.0 645.66 High High

0 Strain