Gene : Eucgr.D00197 E. grandis v2.0
Defline:  (1 of 16) PF00651//PF03000 - BTB/POZ domain (BTB) // NPH3 family (NPH3) Genomic Order:  147
Name:  ? Eucgr.D00197 Secondary Identifier:  ? PAC:32050725
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D00197 0.5kb upstream 0.5kb upstream 5809 true Chr04: 3285783-3291591 Eucalyptus grandis
Eucgr.D00197 0.5kb upstream 0.5kb upstream 500 false Chr04: 3291092-3291591 Eucalyptus grandis
Eucgr.D00197 0.5kb downstream 0.5kb downstream 5809 true Chr04: 3285283-3291091 Eucalyptus grandis
Eucgr.D00197 0.5kb downstream 0.5kb downstream 500 false Chr04: 3285283-3285782 Eucalyptus grandis
Eucgr.D00197 1.0kb upstream 1.0kb upstream 6309 true Chr04: 3285783-3292091 Eucalyptus grandis
Eucgr.D00197 1.0kb upstream 1.0kb upstream 1000 false Chr04: 3291092-3292091 Eucalyptus grandis
Eucgr.D00197 1.0kb downstream 1.0kb downstream 6309 true Chr04: 3284783-3291091 Eucalyptus grandis
Eucgr.D00197 1.0kb downstream 1.0kb downstream 1000 false Chr04: 3284783-3285782 Eucalyptus grandis
Eucgr.D00197 2.0kb upstream 2.0kb upstream 7309 true Chr04: 3285783-3293091 Eucalyptus grandis
Eucgr.D00197 2.0kb upstream 2.0kb upstream 2000 false Chr04: 3291092-3293091 Eucalyptus grandis
Eucgr.D00197 2.0kb downstream 2.0kb downstream 7309 true Chr04: 3283783-3291091 Eucalyptus grandis
Eucgr.D00197 2.0kb downstream 2.0kb downstream 2000 false Chr04: 3283783-3285782 Eucalyptus grandis
Eucgr.D00197 5.0kb upstream 5.0kb upstream 10309 true Chr04: 3285783-3296091 Eucalyptus grandis
Eucgr.D00197 5.0kb upstream 5.0kb upstream 5000 false Chr04: 3291092-3296091 Eucalyptus grandis
Eucgr.D00197 5.0kb downstream 5.0kb downstream 10309 true Chr04: 3280783-3291091 Eucalyptus grandis
Eucgr.D00197 5.0kb downstream 5.0kb downstream 5000 false Chr04: 3280783-3285782 Eucalyptus grandis
Eucgr.D00197 10.0kb upstream 10.0kb upstream 15309 true Chr04: 3285783-3301091 Eucalyptus grandis
Eucgr.D00197 10.0kb upstream 10.0kb upstream 10000 false Chr04: 3291092-3301091 Eucalyptus grandis
Eucgr.D00197 10.0kb downstream 10.0kb downstream 15309 true Chr04: 3275783-3291091 Eucalyptus grandis
Eucgr.D00197 10.0kb downstream 10.0kb downstream 10000 false Chr04: 3275783-3285782 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066355 5270 Rosid View MSA
123740416 5271 Pentapetalae View MSA
122793114 5272 Eudicot View MSA
122046069 5273 Angiosperm View MSA
121347106 5274 Embryophyte View MSA
123380493 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.19808 0.0 5.55133    
cufflinks 7.56544 0.0 17.0939    
cufflinks 2.99092 0.0 7.29739    
cufflinks 7.19985 0.0 16.2863    
cufflinks 7.21213 0.0 16.3671    
cufflinks 1.21639 0.0 3.26913   Low

0 Strain