Gene : Eucgr.D00129 E. grandis v2.0
Defline:  (1 of 4) PF03807//PF14833 - NADP oxidoreductase coenzyme F420-dependent (F420_oxidored) // NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase (NAD_binding_11) Genomic Order:  105
Name:  ? Eucgr.D00129 Secondary Identifier:  ? PAC:32051540
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis VALDEG-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D00129 0.5kb upstream 0.5kb upstream 9953 true Chr04: 2295580-2305532 Eucalyptus grandis
Eucgr.D00129 0.5kb upstream 0.5kb upstream 500 false Chr04: 2295580-2296079 Eucalyptus grandis
Eucgr.D00129 0.5kb downstream 0.5kb downstream 9953 true Chr04: 2296080-2306032 Eucalyptus grandis
Eucgr.D00129 0.5kb downstream 0.5kb downstream 500 false Chr04: 2305533-2306032 Eucalyptus grandis
Eucgr.D00129 1.0kb upstream 1.0kb upstream 10453 true Chr04: 2295080-2305532 Eucalyptus grandis
Eucgr.D00129 1.0kb upstream 1.0kb upstream 1000 false Chr04: 2295080-2296079 Eucalyptus grandis
Eucgr.D00129 1.0kb downstream 1.0kb downstream 10453 true Chr04: 2296080-2306532 Eucalyptus grandis
Eucgr.D00129 1.0kb downstream 1.0kb downstream 1000 false Chr04: 2305533-2306532 Eucalyptus grandis
Eucgr.D00129 2.0kb upstream 2.0kb upstream 11453 true Chr04: 2294080-2305532 Eucalyptus grandis
Eucgr.D00129 2.0kb upstream 2.0kb upstream 2000 false Chr04: 2294080-2296079 Eucalyptus grandis
Eucgr.D00129 2.0kb downstream 2.0kb downstream 11453 true Chr04: 2296080-2307532 Eucalyptus grandis
Eucgr.D00129 2.0kb downstream 2.0kb downstream 2000 false Chr04: 2305533-2307532 Eucalyptus grandis
Eucgr.D00129 5.0kb upstream 5.0kb upstream 14453 true Chr04: 2291080-2305532 Eucalyptus grandis
Eucgr.D00129 5.0kb upstream 5.0kb upstream 5000 false Chr04: 2291080-2296079 Eucalyptus grandis
Eucgr.D00129 5.0kb downstream 5.0kb downstream 14453 true Chr04: 2296080-2310532 Eucalyptus grandis
Eucgr.D00129 5.0kb downstream 5.0kb downstream 5000 false Chr04: 2305533-2310532 Eucalyptus grandis
Eucgr.D00129 10.0kb upstream 10.0kb upstream 19453 true Chr04: 2286080-2305532 Eucalyptus grandis
Eucgr.D00129 10.0kb upstream 10.0kb upstream 10000 false Chr04: 2286080-2296079 Eucalyptus grandis
Eucgr.D00129 10.0kb downstream 10.0kb downstream 19453 true Chr04: 2296080-2315532 Eucalyptus grandis
Eucgr.D00129 10.0kb downstream 10.0kb downstream 10000 false Chr04: 2305533-2315532 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062564 5270 Rosid View MSA
123738883 5271 Pentapetalae View MSA
122787575 5272 Eudicot View MSA
122045971 5273 Angiosperm View MSA
121347535 5274 Embryophyte View MSA
123424560 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.03796 0.0 9.51957    
cufflinks 0.626775 0.0 2.3262 Low  
cufflinks 4.00158 0.0 10.354   High
cufflinks 0.924274 0.0 3.12531    
cufflinks 2.71343 0.0 7.51761    
cufflinks 0.464055 0.0 1.7252 Low Low

0 Strain