Gene : Eucgr.C04384 E. grandis v2.0
Defline:  (1 of 2) PTHR13861 - VACUOLAR ATP SYNTHASE SUBUNIT F Genomic Order:  3366
Name:  ? Eucgr.C04384 Secondary Identifier:  ? PAC:32037896
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-6126 Eucalyptus grandis pathologic  
Egrandis PWY-7219 Eucalyptus grandis pathologic  
Egrandis PWY-7229 Eucalyptus grandis pathologic  
Egrandis PWY-841 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C04384 0.5kb upstream 0.5kb upstream 3748 true Chr03: 82040985-82044732 Eucalyptus grandis
Eucgr.C04384 0.5kb upstream 0.5kb upstream 500 false Chr03: 82044233-82044732 Eucalyptus grandis
Eucgr.C04384 0.5kb downstream 0.5kb downstream 3748 true Chr03: 82040485-82044232 Eucalyptus grandis
Eucgr.C04384 0.5kb downstream 0.5kb downstream 500 false Chr03: 82040485-82040984 Eucalyptus grandis
Eucgr.C04384 1.0kb upstream 1.0kb upstream 4248 true Chr03: 82040985-82045232 Eucalyptus grandis
Eucgr.C04384 1.0kb upstream 1.0kb upstream 1000 false Chr03: 82044233-82045232 Eucalyptus grandis
Eucgr.C04384 1.0kb downstream 1.0kb downstream 4248 true Chr03: 82039985-82044232 Eucalyptus grandis
Eucgr.C04384 1.0kb downstream 1.0kb downstream 1000 false Chr03: 82039985-82040984 Eucalyptus grandis
Eucgr.C04384 2.0kb upstream 2.0kb upstream 5248 true Chr03: 82040985-82046232 Eucalyptus grandis
Eucgr.C04384 2.0kb upstream 2.0kb upstream 2000 false Chr03: 82044233-82046232 Eucalyptus grandis
Eucgr.C04384 2.0kb downstream 2.0kb downstream 5248 true Chr03: 82038985-82044232 Eucalyptus grandis
Eucgr.C04384 2.0kb downstream 2.0kb downstream 2000 false Chr03: 82038985-82040984 Eucalyptus grandis
Eucgr.C04384 5.0kb upstream 5.0kb upstream 8248 true Chr03: 82040985-82049232 Eucalyptus grandis
Eucgr.C04384 5.0kb upstream 5.0kb upstream 5000 false Chr03: 82044233-82049232 Eucalyptus grandis
Eucgr.C04384 5.0kb downstream 5.0kb downstream 8248 true Chr03: 82035985-82044232 Eucalyptus grandis
Eucgr.C04384 5.0kb downstream 5.0kb downstream 5000 false Chr03: 82035985-82040984 Eucalyptus grandis
Eucgr.C04384 10.0kb upstream 10.0kb upstream 13248 true Chr03: 82040985-82054232 Eucalyptus grandis
Eucgr.C04384 10.0kb upstream 10.0kb upstream 10000 false Chr03: 82044233-82054232 Eucalyptus grandis
Eucgr.C04384 10.0kb downstream 10.0kb downstream 13248 true Chr03: 82030985-82044232 Eucalyptus grandis
Eucgr.C04384 10.0kb downstream 10.0kb downstream 10000 false Chr03: 82030985-82040984 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062785 5270 Rosid View MSA
123736748 5271 Pentapetalae View MSA
122792211 5272 Eudicot View MSA
122044374 5273 Angiosperm View MSA
121344263 5274 Embryophyte View MSA
123428206 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.0929 0.0 31.509    
cufflinks 54.6968 0.0 122.983 High  
cufflinks 12.2064 0.0 30.0449    
cufflinks 60.0616 0.0 148.043 High  
cufflinks 52.0502 0.0 117.123 High  
cufflinks 6.67154 0.0 23.1448   Low

0 Strain