Gene : Eucgr.C04380 E. grandis v2.0
Defline:  (1 of 4) PF03108//PF04434//PF10551 - MuDR family transposase (DBD_Tnp_Mut) // SWIM zinc finger (SWIM) // MULE transposase domain (MULE) Genomic Order:  3362
Name:  ? Eucgr.C04380 Secondary Identifier:  ? PAC:32037783
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C04380 0.5kb upstream 0.5kb upstream 3585 true Chr03: 82004866-82008450 Eucalyptus grandis
Eucgr.C04380 0.5kb upstream 0.5kb upstream 500 false Chr03: 82004866-82005365 Eucalyptus grandis
Eucgr.C04380 0.5kb downstream 0.5kb downstream 3585 true Chr03: 82005366-82008950 Eucalyptus grandis
Eucgr.C04380 0.5kb downstream 0.5kb downstream 500 false Chr03: 82008451-82008950 Eucalyptus grandis
Eucgr.C04380 1.0kb upstream 1.0kb upstream 4085 true Chr03: 82004366-82008450 Eucalyptus grandis
Eucgr.C04380 1.0kb upstream 1.0kb upstream 1000 false Chr03: 82004366-82005365 Eucalyptus grandis
Eucgr.C04380 1.0kb downstream 1.0kb downstream 4085 true Chr03: 82005366-82009450 Eucalyptus grandis
Eucgr.C04380 1.0kb downstream 1.0kb downstream 1000 false Chr03: 82008451-82009450 Eucalyptus grandis
Eucgr.C04380 2.0kb upstream 2.0kb upstream 5085 true Chr03: 82003366-82008450 Eucalyptus grandis
Eucgr.C04380 2.0kb upstream 2.0kb upstream 2000 false Chr03: 82003366-82005365 Eucalyptus grandis
Eucgr.C04380 2.0kb downstream 2.0kb downstream 5085 true Chr03: 82005366-82010450 Eucalyptus grandis
Eucgr.C04380 2.0kb downstream 2.0kb downstream 2000 false Chr03: 82008451-82010450 Eucalyptus grandis
Eucgr.C04380 5.0kb upstream 5.0kb upstream 8085 true Chr03: 82000366-82008450 Eucalyptus grandis
Eucgr.C04380 5.0kb upstream 5.0kb upstream 5000 false Chr03: 82000366-82005365 Eucalyptus grandis
Eucgr.C04380 5.0kb downstream 5.0kb downstream 8085 true Chr03: 82005366-82013450 Eucalyptus grandis
Eucgr.C04380 5.0kb downstream 5.0kb downstream 5000 false Chr03: 82008451-82013450 Eucalyptus grandis
Eucgr.C04380 10.0kb upstream 10.0kb upstream 13085 true Chr03: 81995366-82008450 Eucalyptus grandis
Eucgr.C04380 10.0kb upstream 10.0kb upstream 10000 false Chr03: 81995366-82005365 Eucalyptus grandis
Eucgr.C04380 10.0kb downstream 10.0kb downstream 13085 true Chr03: 82005366-82018450 Eucalyptus grandis
Eucgr.C04380 10.0kb downstream 10.0kb downstream 10000 false Chr03: 82008451-82018450 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121780266 5273 Angiosperm View MSA
124069490 5270 Rosid View MSA
123745666 5271 Pentapetalae View MSA
122771596 5272 Eudicot View MSA
121051888 5274 Embryophyte View MSA
123091958 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.60728 0.0 4.21197   Low
cufflinks 3.54402 0.0 8.49293    
cufflinks 2.39311 0.0 5.99489    
cufflinks 5.38942 0.0 12.4507   High
cufflinks 4.16919 0.0 9.8908    
cufflinks 4.5924 0.0 10.9343    

0 Strain