Gene : Eucgr.C04229 E. grandis v2.0
Defline:  (1 of 1) KOG3046 - Transcription factor, subunit of SRB subcomplex of RNA polymerase II Genomic Order:  3250
Name:  ? Eucgr.C04229 Secondary Identifier:  ? PAC:32039846
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C04229 0.5kb upstream 0.5kb upstream 5128 true Chr03: 79789323-79794450 Eucalyptus grandis
Eucgr.C04229 0.5kb upstream 0.5kb upstream 500 false Chr03: 79789323-79789822 Eucalyptus grandis
Eucgr.C04229 0.5kb downstream 0.5kb downstream 5128 true Chr03: 79789823-79794950 Eucalyptus grandis
Eucgr.C04229 0.5kb downstream 0.5kb downstream 500 false Chr03: 79794451-79794950 Eucalyptus grandis
Eucgr.C04229 1.0kb upstream 1.0kb upstream 5628 true Chr03: 79788823-79794450 Eucalyptus grandis
Eucgr.C04229 1.0kb upstream 1.0kb upstream 1000 false Chr03: 79788823-79789822 Eucalyptus grandis
Eucgr.C04229 1.0kb downstream 1.0kb downstream 5628 true Chr03: 79789823-79795450 Eucalyptus grandis
Eucgr.C04229 1.0kb downstream 1.0kb downstream 1000 false Chr03: 79794451-79795450 Eucalyptus grandis
Eucgr.C04229 2.0kb upstream 2.0kb upstream 6628 true Chr03: 79787823-79794450 Eucalyptus grandis
Eucgr.C04229 2.0kb upstream 2.0kb upstream 2000 false Chr03: 79787823-79789822 Eucalyptus grandis
Eucgr.C04229 2.0kb downstream 2.0kb downstream 6628 true Chr03: 79789823-79796450 Eucalyptus grandis
Eucgr.C04229 2.0kb downstream 2.0kb downstream 2000 false Chr03: 79794451-79796450 Eucalyptus grandis
Eucgr.C04229 5.0kb upstream 5.0kb upstream 9628 true Chr03: 79784823-79794450 Eucalyptus grandis
Eucgr.C04229 5.0kb upstream 5.0kb upstream 5000 false Chr03: 79784823-79789822 Eucalyptus grandis
Eucgr.C04229 5.0kb downstream 5.0kb downstream 9628 true Chr03: 79789823-79799450 Eucalyptus grandis
Eucgr.C04229 5.0kb downstream 5.0kb downstream 5000 false Chr03: 79794451-79799450 Eucalyptus grandis
Eucgr.C04229 10.0kb upstream 10.0kb upstream 14628 true Chr03: 79779823-79794450 Eucalyptus grandis
Eucgr.C04229 10.0kb upstream 10.0kb upstream 10000 false Chr03: 79779823-79789822 Eucalyptus grandis
Eucgr.C04229 10.0kb downstream 10.0kb downstream 14628 true Chr03: 79789823-79804450 Eucalyptus grandis
Eucgr.C04229 10.0kb downstream 10.0kb downstream 10000 false Chr03: 79794451-79804450 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062321 5270 Rosid View MSA
123743947 5271 Pentapetalae View MSA
122790703 5272 Eudicot View MSA
122043326 5273 Angiosperm View MSA
121345853 5274 Embryophyte View MSA
123425675 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.19 0.0 51.7339   Low
cufflinks 37.0863 0.0 92.9067   High
cufflinks 23.511 0.0 61.0783    
cufflinks 34.4271 0.0 89.803    
cufflinks 20.5238 0.0 60.2135    
cufflinks 32.4673 0.0 82.3855    

0 Strain