Gene : Eucgr.D00708 E. grandis v2.0
Defline:  (1 of 2) PTHR12937 - VACUOLAR PROTEIN SORTING 28, ISOFORM 2 VPS28 Genomic Order:  580
Name:  ? Eucgr.D00708 Secondary Identifier:  ? PAC:32050652
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D00708 0.5kb upstream 0.5kb upstream 2245 true Chr04: 13045883-13048127 Eucalyptus grandis
Eucgr.D00708 0.5kb upstream 0.5kb upstream 500 false Chr04: 13045883-13046382 Eucalyptus grandis
Eucgr.D00708 0.5kb downstream 0.5kb downstream 2245 true Chr04: 13046383-13048627 Eucalyptus grandis
Eucgr.D00708 0.5kb downstream 0.5kb downstream 500 false Chr04: 13048128-13048627 Eucalyptus grandis
Eucgr.D00708 1.0kb upstream 1.0kb upstream 2745 true Chr04: 13045383-13048127 Eucalyptus grandis
Eucgr.D00708 1.0kb upstream 1.0kb upstream 1000 false Chr04: 13045383-13046382 Eucalyptus grandis
Eucgr.D00708 1.0kb downstream 1.0kb downstream 2745 true Chr04: 13046383-13049127 Eucalyptus grandis
Eucgr.D00708 1.0kb downstream 1.0kb downstream 1000 false Chr04: 13048128-13049127 Eucalyptus grandis
Eucgr.D00708 2.0kb upstream 2.0kb upstream 3745 true Chr04: 13044383-13048127 Eucalyptus grandis
Eucgr.D00708 2.0kb upstream 2.0kb upstream 2000 false Chr04: 13044383-13046382 Eucalyptus grandis
Eucgr.D00708 2.0kb downstream 2.0kb downstream 3745 true Chr04: 13046383-13050127 Eucalyptus grandis
Eucgr.D00708 2.0kb downstream 2.0kb downstream 2000 false Chr04: 13048128-13050127 Eucalyptus grandis
Eucgr.D00708 5.0kb upstream 5.0kb upstream 6745 true Chr04: 13041383-13048127 Eucalyptus grandis
Eucgr.D00708 5.0kb upstream 5.0kb upstream 5000 false Chr04: 13041383-13046382 Eucalyptus grandis
Eucgr.D00708 5.0kb downstream 5.0kb downstream 6745 true Chr04: 13046383-13053127 Eucalyptus grandis
Eucgr.D00708 5.0kb downstream 5.0kb downstream 5000 false Chr04: 13048128-13053127 Eucalyptus grandis
Eucgr.D00708 10.0kb upstream 10.0kb upstream 11745 true Chr04: 13036383-13048127 Eucalyptus grandis
Eucgr.D00708 10.0kb upstream 10.0kb upstream 10000 false Chr04: 13036383-13046382 Eucalyptus grandis
Eucgr.D00708 10.0kb downstream 10.0kb downstream 11745 true Chr04: 13046383-13058127 Eucalyptus grandis
Eucgr.D00708 10.0kb downstream 10.0kb downstream 10000 false Chr04: 13048128-13058127 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124064645 5270 Rosid View MSA
123751452 5271 Pentapetalae View MSA
122791006 5272 Eudicot View MSA
122044389 5273 Angiosperm View MSA
121350792 5274 Embryophyte View MSA
123425897 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.2565 0.0 63.6842 High  
cufflinks 198.003 0.0 456.698 High High
cufflinks 30.3401 0.0 68.2459 High  
cufflinks 192.782 0.0 442.991 High High
cufflinks 99.3605 0.0 221.22 High  
cufflinks 21.8954 0.0 50.0459   Low

0 Strain