Gene : Eucgr.D00323 E. grandis v2.0
Defline:  (1 of 1) PTHR12526:SF304 - STARCH SYNTHASE 4, CHLOROPLASTIC/AMYLOPLASTIC-RELATED Genomic Order:  255
Name:  ? Eucgr.D00323 Secondary Identifier:  ? PAC:32052126
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis GLYCOGENSYNTH-PWY Eucalyptus grandis pathologic  
Egrandis PWY-622 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D00323 0.5kb upstream 0.5kb upstream 13150 true Chr04: 5519211-5532360 Eucalyptus grandis
Eucgr.D00323 0.5kb upstream 0.5kb upstream 500 false Chr04: 5531861-5532360 Eucalyptus grandis
Eucgr.D00323 0.5kb downstream 0.5kb downstream 13150 true Chr04: 5518711-5531860 Eucalyptus grandis
Eucgr.D00323 0.5kb downstream 0.5kb downstream 500 false Chr04: 5518711-5519210 Eucalyptus grandis
Eucgr.D00323 1.0kb upstream 1.0kb upstream 13650 true Chr04: 5519211-5532860 Eucalyptus grandis
Eucgr.D00323 1.0kb upstream 1.0kb upstream 1000 false Chr04: 5531861-5532860 Eucalyptus grandis
Eucgr.D00323 1.0kb downstream 1.0kb downstream 13650 true Chr04: 5518211-5531860 Eucalyptus grandis
Eucgr.D00323 1.0kb downstream 1.0kb downstream 1000 false Chr04: 5518211-5519210 Eucalyptus grandis
Eucgr.D00323 2.0kb upstream 2.0kb upstream 14650 true Chr04: 5519211-5533860 Eucalyptus grandis
Eucgr.D00323 2.0kb upstream 2.0kb upstream 2000 false Chr04: 5531861-5533860 Eucalyptus grandis
Eucgr.D00323 2.0kb downstream 2.0kb downstream 14650 true Chr04: 5517211-5531860 Eucalyptus grandis
Eucgr.D00323 2.0kb downstream 2.0kb downstream 2000 false Chr04: 5517211-5519210 Eucalyptus grandis
Eucgr.D00323 5.0kb upstream 5.0kb upstream 17650 true Chr04: 5519211-5536860 Eucalyptus grandis
Eucgr.D00323 5.0kb upstream 5.0kb upstream 5000 false Chr04: 5531861-5536860 Eucalyptus grandis
Eucgr.D00323 5.0kb downstream 5.0kb downstream 17650 true Chr04: 5514211-5531860 Eucalyptus grandis
Eucgr.D00323 5.0kb downstream 5.0kb downstream 5000 false Chr04: 5514211-5519210 Eucalyptus grandis
Eucgr.D00323 10.0kb upstream 10.0kb upstream 22650 true Chr04: 5519211-5541860 Eucalyptus grandis
Eucgr.D00323 10.0kb upstream 10.0kb upstream 10000 false Chr04: 5531861-5541860 Eucalyptus grandis
Eucgr.D00323 10.0kb downstream 10.0kb downstream 22650 true Chr04: 5509211-5531860 Eucalyptus grandis
Eucgr.D00323 10.0kb downstream 10.0kb downstream 10000 false Chr04: 5509211-5519210 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062542 5270 Rosid View MSA
123737586 5271 Pentapetalae View MSA
122786746 5272 Eudicot View MSA
122042885 5273 Angiosperm View MSA
121344527 5274 Embryophyte View MSA
123428648 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.68169 0.0 17.1199    
cufflinks 9.10057 0.0 20.1707    
cufflinks 7.7599 0.0 17.2684    
cufflinks 4.34073 0.0 9.91053   Low
cufflinks 6.4325 0.0 14.4119    
cufflinks 21.0861 0.0 46.9425   High

0 Strain