Gene : Eucgr.D01185 E. grandis v2.0

Defline:  (1 of 7) PF01535//PF12854//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1149
Name:  ? Eucgr.D01185 Secondary Identifier:  ? PAC:32051535

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D01185 0.5kb upstream 0.5kb upstream 2323 true Chr04: 25133249-25135571 Eucalyptus grandis
Eucgr.D01185 0.5kb upstream 0.5kb upstream 500 false Chr04: 25133249-25133748 Eucalyptus grandis
Eucgr.D01185 0.5kb downstream 0.5kb downstream 2323 true Chr04: 25133749-25136071 Eucalyptus grandis
Eucgr.D01185 0.5kb downstream 0.5kb downstream 500 false Chr04: 25135572-25136071 Eucalyptus grandis
Eucgr.D01185 1.0kb upstream 1.0kb upstream 2823 true Chr04: 25132749-25135571 Eucalyptus grandis
Eucgr.D01185 1.0kb upstream 1.0kb upstream 1000 false Chr04: 25132749-25133748 Eucalyptus grandis
Eucgr.D01185 1.0kb downstream 1.0kb downstream 2823 true Chr04: 25133749-25136571 Eucalyptus grandis
Eucgr.D01185 1.0kb downstream 1.0kb downstream 1000 false Chr04: 25135572-25136571 Eucalyptus grandis
Eucgr.D01185 2.0kb upstream 2.0kb upstream 3823 true Chr04: 25131749-25135571 Eucalyptus grandis
Eucgr.D01185 2.0kb upstream 2.0kb upstream 2000 false Chr04: 25131749-25133748 Eucalyptus grandis
Eucgr.D01185 2.0kb downstream 2.0kb downstream 3823 true Chr04: 25133749-25137571 Eucalyptus grandis
Eucgr.D01185 2.0kb downstream 2.0kb downstream 2000 false Chr04: 25135572-25137571 Eucalyptus grandis
Eucgr.D01185 5.0kb upstream 5.0kb upstream 6823 true Chr04: 25128749-25135571 Eucalyptus grandis
Eucgr.D01185 5.0kb upstream 5.0kb upstream 5000 false Chr04: 25128749-25133748 Eucalyptus grandis
Eucgr.D01185 5.0kb downstream 5.0kb downstream 6823 true Chr04: 25133749-25140571 Eucalyptus grandis
Eucgr.D01185 5.0kb downstream 5.0kb downstream 5000 false Chr04: 25135572-25140571 Eucalyptus grandis
Eucgr.D01185 10.0kb upstream 10.0kb upstream 11823 true Chr04: 25123749-25135571 Eucalyptus grandis
Eucgr.D01185 10.0kb upstream 10.0kb upstream 10000 false Chr04: 25123749-25133748 Eucalyptus grandis
Eucgr.D01185 10.0kb downstream 10.0kb downstream 11823 true Chr04: 25133749-25145571 Eucalyptus grandis
Eucgr.D01185 10.0kb downstream 10.0kb downstream 10000 false Chr04: 25135572-25145571 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124072513 5270 Rosid View MSA
123747473 5271 Pentapetalae View MSA
122794645 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.84009 0.0 7.34232   High
cufflinks 0.676395 0.0 2.00163 Low  
cufflinks 2.70086 0.0 6.96603    
cufflinks 0.592962 0.0 1.77018   Low
cufflinks 0.97021 0.0 2.77392    
cufflinks 2.06289 0.0 5.54417    

0 Strain