Gene : Eucgr.D01115 E. grandis v2.0
Defline:  (1 of 1) PTHR11229:SF5 - 50S RIBOSOMAL PROTEIN L3-1, CHLOROPLASTIC Genomic Order:  1094
Name:  ? Eucgr.D01115 Secondary Identifier:  ? PAC:32052216
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D01115 0.5kb upstream 0.5kb upstream 4916 true Chr04: 23579062-23583977 Eucalyptus grandis
Eucgr.D01115 0.5kb upstream 0.5kb upstream 500 false Chr04: 23583478-23583977 Eucalyptus grandis
Eucgr.D01115 0.5kb downstream 0.5kb downstream 4916 true Chr04: 23578562-23583477 Eucalyptus grandis
Eucgr.D01115 0.5kb downstream 0.5kb downstream 500 false Chr04: 23578562-23579061 Eucalyptus grandis
Eucgr.D01115 1.0kb upstream 1.0kb upstream 5416 true Chr04: 23579062-23584477 Eucalyptus grandis
Eucgr.D01115 1.0kb upstream 1.0kb upstream 1000 false Chr04: 23583478-23584477 Eucalyptus grandis
Eucgr.D01115 1.0kb downstream 1.0kb downstream 5416 true Chr04: 23578062-23583477 Eucalyptus grandis
Eucgr.D01115 1.0kb downstream 1.0kb downstream 1000 false Chr04: 23578062-23579061 Eucalyptus grandis
Eucgr.D01115 2.0kb upstream 2.0kb upstream 6416 true Chr04: 23579062-23585477 Eucalyptus grandis
Eucgr.D01115 2.0kb upstream 2.0kb upstream 2000 false Chr04: 23583478-23585477 Eucalyptus grandis
Eucgr.D01115 2.0kb downstream 2.0kb downstream 6416 true Chr04: 23577062-23583477 Eucalyptus grandis
Eucgr.D01115 2.0kb downstream 2.0kb downstream 2000 false Chr04: 23577062-23579061 Eucalyptus grandis
Eucgr.D01115 5.0kb upstream 5.0kb upstream 9416 true Chr04: 23579062-23588477 Eucalyptus grandis
Eucgr.D01115 5.0kb upstream 5.0kb upstream 5000 false Chr04: 23583478-23588477 Eucalyptus grandis
Eucgr.D01115 5.0kb downstream 5.0kb downstream 9416 true Chr04: 23574062-23583477 Eucalyptus grandis
Eucgr.D01115 5.0kb downstream 5.0kb downstream 5000 false Chr04: 23574062-23579061 Eucalyptus grandis
Eucgr.D01115 10.0kb upstream 10.0kb upstream 14416 true Chr04: 23579062-23593477 Eucalyptus grandis
Eucgr.D01115 10.0kb upstream 10.0kb upstream 10000 false Chr04: 23583478-23593477 Eucalyptus grandis
Eucgr.D01115 10.0kb downstream 10.0kb downstream 14416 true Chr04: 23569062-23583477 Eucalyptus grandis
Eucgr.D01115 10.0kb downstream 10.0kb downstream 10000 false Chr04: 23569062-23579061 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065748 5270 Rosid View MSA
123738744 5271 Pentapetalae View MSA
122789869 5272 Eudicot View MSA
122045324 5273 Angiosperm View MSA
121345388 5274 Embryophyte View MSA
123425117 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.1599 0.0 58.1806    
cufflinks 3.88996 0.0 10.1273    
cufflinks 15.2156 0.0 34.7773    
cufflinks 1.99614 0.0 5.53225   Low
cufflinks 2.90078 0.0 7.73212    
cufflinks 75.6834 0.0 169.915 High High

0 Strain