Gene : Eucgr.D02280 E. grandis v2.0

Defline:  (1 of 1) PTHR31500:SF10 - AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN Genomic Order:  1886
Name:  ? Eucgr.D02280 Secondary Identifier:  ? PAC:32051006

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D02280 0.5kb upstream 0.5kb upstream 4805 true Chr04: 36183039-36187843 Eucalyptus grandis
Eucgr.D02280 0.5kb upstream 0.5kb upstream 500 false Chr04: 36187344-36187843 Eucalyptus grandis
Eucgr.D02280 0.5kb downstream 0.5kb downstream 4805 true Chr04: 36182539-36187343 Eucalyptus grandis
Eucgr.D02280 0.5kb downstream 0.5kb downstream 500 false Chr04: 36182539-36183038 Eucalyptus grandis
Eucgr.D02280 1.0kb upstream 1.0kb upstream 5305 true Chr04: 36183039-36188343 Eucalyptus grandis
Eucgr.D02280 1.0kb upstream 1.0kb upstream 1000 false Chr04: 36187344-36188343 Eucalyptus grandis
Eucgr.D02280 1.0kb downstream 1.0kb downstream 5305 true Chr04: 36182039-36187343 Eucalyptus grandis
Eucgr.D02280 1.0kb downstream 1.0kb downstream 1000 false Chr04: 36182039-36183038 Eucalyptus grandis
Eucgr.D02280 2.0kb upstream 2.0kb upstream 6305 true Chr04: 36183039-36189343 Eucalyptus grandis
Eucgr.D02280 2.0kb upstream 2.0kb upstream 2000 false Chr04: 36187344-36189343 Eucalyptus grandis
Eucgr.D02280 2.0kb downstream 2.0kb downstream 6305 true Chr04: 36181039-36187343 Eucalyptus grandis
Eucgr.D02280 2.0kb downstream 2.0kb downstream 2000 false Chr04: 36181039-36183038 Eucalyptus grandis
Eucgr.D02280 5.0kb upstream 5.0kb upstream 9305 true Chr04: 36183039-36192343 Eucalyptus grandis
Eucgr.D02280 5.0kb upstream 5.0kb upstream 5000 false Chr04: 36187344-36192343 Eucalyptus grandis
Eucgr.D02280 5.0kb downstream 5.0kb downstream 9305 true Chr04: 36178039-36187343 Eucalyptus grandis
Eucgr.D02280 5.0kb downstream 5.0kb downstream 5000 false Chr04: 36178039-36183038 Eucalyptus grandis
Eucgr.D02280 10.0kb upstream 10.0kb upstream 14305 true Chr04: 36183039-36197343 Eucalyptus grandis
Eucgr.D02280 10.0kb upstream 10.0kb upstream 10000 false Chr04: 36187344-36197343 Eucalyptus grandis
Eucgr.D02280 10.0kb downstream 10.0kb downstream 14305 true Chr04: 36173039-36187343 Eucalyptus grandis
Eucgr.D02280 10.0kb downstream 10.0kb downstream 10000 false Chr04: 36173039-36183038 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041209 5273 Angiosperm View MSA
124064168 5270 Rosid View MSA
123741988 5271 Pentapetalae View MSA
122789787 5272 Eudicot View MSA
121348420 5274 Embryophyte View MSA
123380859 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.3818 0.0 49.2058    
cufflinks 14.0854 0.0 32.682    
cufflinks 10.8337 0.0 26.8876    
cufflinks 3.49179 0.0 9.1684    
cufflinks 1.11504 0.0 3.57308   Low
cufflinks 17.1426 0.0 39.3954    

0 Strain